Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0333 ATGAGAAGGGTTCATCGGCTTTGTCTTTCTCATGCTCTTCTATTTTTAATTCTATTTCTCGTCGGATTTTGCTCTGCCGTCACTGAGAATGACATTTTGCTTCAATTCAAAGATGCTATTACAGAGGATCCGTTTGATTTCTTGAAAACTTGGGTTGCCGGCGAGGATCATTGCCGGAGTTTCAACGGCGTGTTCTGTAACTCCGATGGGTTCGTGGAGAGGATTGTTCTATGGAACTCCAGCTTGGCTGGAACTTTGTCGCCTTCCTTGTCGGGATTGAAGTTTTTGAGGACTTTGACATTGTATGGAAATAGATTTACTGGCAATATTCCGATTGAATATGGCGCCATTGTTACACTGTGGAAGTTGAACTTGAGCTCCAATGCTTTTTCGGGTTCGGTTCCGGAGTTCATTGGTGATTTGCCGAGCATTCGGTTTCTGGATTTGTCTAGAAATGGCTTTACTGGGGAGATTCCTTCAGCTGTGTTCAAGAATTGTTTCAAAACTAGATTTGTTTCATTTTCTCATAACAGATTTTCAGGTAGGATACCTTCAACAATTTTGAACTGTTTGAGCCTTGAAGGCTTTGATTTCTCAAACAATGTTCTAAGTGGGAGCATTCCCTTGAAACTTTGTGATATTCAAAGATTAGAGTATGTATCTGTGAGAAGCAATGCATTGTCTGGGAGTATCCAAGGGCAGTTCTCTGCTTGCCAGAGCTTGAAACTTGTGGATCTGAGTAGCAATTTGTTCACCGGGTCACCGCCGTTCGAGGTTCTCGGATTCAAAAACATCACTTATTTTAATGTCTCATATAACAGGTTTAGTGGGGGAATTGCAGAGGTTGTGGGTTGTAGCAATAATCTAGAAGTTCTTGATGTTTCAGGAAATGGTTTGGATGGAGAGATCCCATTGAGCATTACAAAGTGTGGAAGTCTTAAAATCTTAGATTTTGAATCTAACAAGCTGGTTGGGAAGATCCCTGCTGAACTTGCAGATTTGAAAAAGCTTTTGGTGCTTCGGTTGGGTTATAACTCGATCACTGGGACGATTCCAGCCATTTTCGGGAACATCGAGCTACTTCAGGTTTTGAATTTTCACAATCTCAATCTTGTTGGTGAGATTCCTGATGACATAACCAGTTGCAGGTTTCTTCTTGAGCTGGATGTTTCTGGTAATGCATTGGAAGGGGAGATTCCTCAATCTCTTTACAACATGACATACCTTGAAATTCTTGATCTACACAATAATCATCTGAATGGAAGCATTCCATCCATACTTGGGAGCCTCTCGAAACTACAGTTTCTGGATCTAGCTCAAAACCGGCTATCCGGTTCGATACCACCTACTCTTGAAAATCTCACATTGCTGCACCATTTCAATGTCTCTTTCAATAACCTTTCAGGTGCCATACCTCCCATTAATACGATCCAAAATTTTGGGCCTTCTGCATTCTCAAACAATCCTTTTCTTTGTGGTGCTCCCCTGGATCCTTGCTCTGCTGGTAGCATCCCTGGCACGACTTCCATATCAAAGAAACCGAAGGTTCTTAGTCTATCTGCAATCATTGCAATCGTAGCAGCGGTTGTGATCCTAGTCGGGGTTTGCGTGATCTCCATTTTGAACCTAATGGCTCGGACAAGGAAGGCAAAGAGCACCGAAATCATTGAGAGTACACCGCTCGGTTCAACCGATTCAGGTGTCATAATTGGGAAACTGGTTCTTTTCAGCAAAACTTTGCCATCCAAGTATGAAGACTGGGAGGCTGGCACCAAAGCTTTGCTCGACAAGGAATGCCTAATAGGGGGTGGCTCGATCGGCACCGTCTACAGGACAACTTTCGAGGGCGGCATCTCCATTGCCGTGAAGAAGCTCGAGACTCTAGGGAGGATCAGAAGCCAAGATGAGTTCGAGACTGAAATCGGACGTTTGGGAAACATCAAACACCCAAACTTAGTTGCTTTCCAGGGGTACTATTGGTCGTCATCAATGCAGTTGATTCTATCCGAATTCGTCGCAAACGGCAATTTATACGACAATCTACACAGTCTGAATTATCCAGGCACCAGCACAGGCATTGGCAATACGGAGTTACATTGGTCTAGAAGATATAACATTGCAATTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAGGCCTCCAATTCTTCACCTCAACATAAAATCAACTAACATACTGTTAGACGAAAACTACGAAGCCAAGTTATCTGATTACGGGCTGGGGAAGTTGCTTCCAGTTTTGGACAATTATATCTTAACAAAATACCATAGCGCCGTGGGGTACGTTGCACCGGAGTTAGCACAAAGTTTGAGAGCTAGTGAAAAATGCGATGTGTATAGTTTTGGAGTGATTCTACTGGAGTTGGTAACCGGGAGGAAGCCAGTTGAGAGTCCAAGAGCAAACCAGGTTGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAGTGGTTCTGCTTCTGACTGTTTTGATCGAAACTTACGTGGCATTGCCGAAAACGAGCTGATCCAAGTGATGAAATTGGGATTGATTTGTACATCTGAGATCCCTTCAAAGAGACCGAGCATGGCCGAGGTTGTTCAAGTTCTCGAGTCGATACGAAACGGATTAGGATCATAG 2649 43.34 MRRVHRLCLSHALLFLILFLVGFCSAVTENDILLQFKDAITEDPFDFLKTWVAGEDHCRSFNGVFCNSDGFVERIVLWNSSLAGTLSPSLSGLKFLRTLTLYGNRFTGNIPIEYGAIVTLWKLNLSSNAFSGSVPEFIGDLPSIRFLDLSRNGFTGEIPSAVFKNCFKTRFVSFSHNRFSGRIPSTILNCLSLEGFDFSNNVLSGSIPLKLCDIQRLEYVSVRSNALSGSIQGQFSACQSLKLVDLSSNLFTGSPPFEVLGFKNITYFNVSYNRFSGGIAEVVGCSNNLEVLDVSGNGLDGEIPLSITKCGSLKILDFESNKLVGKIPAELADLKKLLVLRLGYNSITGTIPAIFGNIELLQVLNFHNLNLVGEIPDDITSCRFLLELDVSGNALEGEIPQSLYNMTYLEILDLHNNHLNGSIPSILGSLSKLQFLDLAQNRLSGSIPPTLENLTLLHHFNVSFNNLSGAIPPINTIQNFGPSAFSNNPFLCGAPLDPCSAGSIPGTTSISKKPKVLSLSAIIAIVAAVVILVGVCVISILNLMARTRKAKSTEIIESTPLGSTDSGVIIGKLVLFSKTLPSKYEDWEAGTKALLDKECLIGGGSIGTVYRTTFEGGISIAVKKLETLGRIRSQDEFETEIGRLGNIKHPNLVAFQGYYWSSSMQLILSEFVANGNLYDNLHSLNYPGTSTGIGNTELHWSRRYNIAIGTARALAYLHHDCRPPILHLNIKSTNILLDENYEAKLSDYGLGKLLPVLDNYILTKYHSAVGYVAPELAQSLRASEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLESGSASDCFDRNLRGIAENELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLGS 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3912633 3915388 + CcPI632755_10g003330.1 Cco10g0333 189291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0333 882 CDD STKc_IRAK 601 876 - -
Cco10g0333 882 Gene3D Transferase(Phosphotransferase) domain 1 672 880 - -
Cco10g0333 882 ProSiteProfiles Protein kinase domain profile. 595 876 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0333 882 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 279 503 - -
Cco10g0333 882 SUPERFAMILY Protein kinase-like (PK-like) 596 874 IPR011009 -
Cco10g0333 882 Gene3D Ribonuclease Inhibitor 174 503 IPR032675 -
Cco10g0333 882 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 168 - -
Cco10g0333 882 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Cco10g0333 882 PANTHER OS05G0588300 PROTEIN 168 280 IPR050994 -
Cco10g0333 882 FunFam Putative LRR receptor-like serine/threonine-protein kinase 572 671 - -
Cco10g0333 882 Gene3D Phosphorylase Kinase; domain 1 571 671 - -
Cco10g0333 882 FunFam Leucine-rich repeat receptor protein kinase EMS1 183 278 - -
Cco10g0333 882 SUPERFAMILY L domain-like 259 498 - -
Cco10g0333 882 Gene3D Ribonuclease Inhibitor 26 173 IPR032675 -
Cco10g0333 882 Pfam Protein tyrosine and serine/threonine kinase 599 873 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0333 882 Pfam Leucine Rich Repeat 385 406 IPR001611 GO:0005515(InterPro)
Cco10g0333 882 Pfam Leucine Rich Repeat 409 430 IPR001611 GO:0005515(InterPro)
Cco10g0333 882 Pfam Leucine Rich Repeat 337 357 IPR001611 GO:0005515(InterPro)
Cco10g0333 882 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515(InterPro)
Cco10g0333 882 Pfam Leucine Rich Repeat 120 141 IPR001611 GO:0005515(InterPro)
Cco10g0333 882 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Cco10g0333 882 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Cco10g0333 882 Pfam Leucine Rich Repeat 143 162 IPR001611 GO:0005515(InterPro)
Cco10g0333 882 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 672 882 - -
Cco10g0333 882 ProSiteProfiles Leucine-rich repeat profile. 432 455 IPR001611 GO:0005515(InterPro)
Cco10g0333 882 SUPERFAMILY L domain-like 29 284 - -
Cco10g0333 882 SMART LRR_typ_2 141 165 IPR003591 -
Cco10g0333 882 SMART LRR_typ_2 430 454 IPR003591 -
Cco10g0333 882 SMART LRR_typ_2 406 429 IPR003591 -
Cco10g0333 882 SMART LRR_typ_2 334 357 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1657 Cco-Chr7:30624312 Cco10g0333 Cco-Chr10:3912633 4.70E-86 dispersed
Cco10g0333 Cco-Chr10:3912633 Cco10g2265 Cco-Chr10:35515033 2.50E-83 dispersed
Cco10g0333 Cco-Chr10:3912633 Cco11g0578 Cco-Chr11:6196314 6.30E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87135 PF00069 Pkinase 5.20E-35 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0333 - - - 0.0