Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0335 ATGGACCAAAAATTACAAACCCCTCTTTCCATTTTTCATGCAAACCCTAATTTTGTTGACATTCACGAAGTAGTTCCAGAAGAGGAGAACGAGGAGAAGGAAGAAGAAGAGCACACTCGGCCAACAATGACATCTGTGTTGCCCGATGCTGTCGAGAAGCGGCCTAAGAAACATAACAACAATAATCGACTACGACCACCACCACCACCACCACCACCACGAGCAGGGGGTTTCGATCGACAAATGTCGTTGGAAACGGGTTTGAATCGGGTTTCGAAAGGGAAGGGTATTGAGAGAATGGCTCTTCCAAGGAGTGGAAGAAGCTTTGGAGGGTTTGATTCAACCATTACCGAAGGGAAGAAAGCAGATTTTAGTATGTTTAGAACAAAATCAACTCTTAGTAAGCAAAATTCTCTATTGCCATTGAAGAAAGATCATAGAGATCATCAAATGGATCAGTCTCATCAAAGAACTTATGGAAGCTCTGAAGGAATGGATGAATCTGTGAATAAAAGTGTTCCTGTAGGAAGATACTTTGCTGCTCTTAGAGGACCTGAACTTGATCAAGTCAAGGACTACGAAGACATTCTTCTCCCAAAAGACGAAAAATGGCCGTTCCTTCTCCGATTCCCGATTGGATGCTTCGGTATCTGCCTCGGCCTCAGCAGCCAAGCCGTGCTGTGGCGGGCGCTCGCAACGAGCCCCGCCACCAAGTTCCTTCATATTTCCCCATTCATCAACCTTGCCATTTGGGTGTTGGCCACAGCTGCTCTGTGCTCAGTTACAGTGGCTTACGTTCTCAAGTGCATCTTCTACTTTGAAGCTGTAAGGAGAGAGTACTTCCACCCTGTTCGTGTTAACTTCTTCTTTGCCCCTTGGGTCGTCTGCATGTTCCTTGCCATCAGCGTCCCGCCGCGGTTCGTGTCGGAGCCGCTTCACCCGGCTGTTTGGTGTGTCTTCATGGGCCCATACTTCTTGCTCGAGCTTAAGATTTACGGGCAATGGTTGTCCGGAGGGAAGCGACGCCTTTGTAAGGTGGTGAACCCGTCATCGCACTTGTCGGTGGTCGGGAACTTCGTCGGGGCGATACTGGCAGCGAAATGTGGGTGGTTGGAGGCAGCAAAGTTCTTATGGTCAGTTGGGTTTGCACATTATTTGGTGGTGTTTGTGACACTTTATCAAAGGCTGCCGACGAGTGAGGCACTGCCGAAGGAGCTGCACCCTGTTTACTCAATGTTCATTGCTGCCCCTTCAGCAGCCAGCATTGCTTGGCAGACCATTTATGATGACTTTGATGGCTTGTCAAGAACTTGCTTCTTCATTGCTTTGTTTCTCTACATTTCTCTTGTTGTTAGGATCAACTTCTTCACTGGATTCAGATTTTCAGTAGCTTGGTGGTCTTACACATTTCCAATGACAACAGCTTCAGTGGCAACCATAAAGTATGCAGAGCATGTCCCTACAGTTGTAAGTAAAGGTCTGGCACTTACCCTTTCTTTCATGTCCTCTACCATGGTGTCTCTTCTCTTTGTCTCCACTCTCCTTCATGCTTTTGTTTGGAAGACACTGTTCCCCAATGACCTGGCCATTGCTATCACAAAGAAGAGACTTATCAAGGACAGGAGACCATTCAAAAAGGCTTATGACCTCAAACGCTGGACAAAACAAGCTCTTACCAAACACAACAATAAGGATGATGATTTTGATGCACAAAATCAGGCATTTTAA 1728 46.64 MDQKLQTPLSIFHANPNFVDIHEVVPEEENEEKEEEEHTRPTMTSVLPDAVEKRPKKHNNNNRLRPPPPPPPPRAGGFDRQMSLETGLNRVSKGKGIERMALPRSGRSFGGFDSTITEGKKADFSMFRTKSTLSKQNSLLPLKKDHRDHQMDQSHQRTYGSSEGMDESVNKSVPVGRYFAALRGPELDQVKDYEDILLPKDEKWPFLLRFPIGCFGICLGLSSQAVLWRALATSPATKFLHISPFINLAIWVLATAALCSVTVAYVLKCIFYFEAVRREYFHPVRVNFFFAPWVVCMFLAISVPPRFVSEPLHPAVWCVFMGPYFLLELKIYGQWLSGGKRRLCKVVNPSSHLSVVGNFVGAILAAKCGWLEAAKFLWSVGFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQTIYDDFDGLSRTCFFIALFLYISLVVRINFFTGFRFSVAWWSYTFPMTTASVATIKYAEHVPTVVSKGLALTLSFMSSTMVSLLFVSTLLHAFVWKTLFPNDLAIAITKKRLIKDRRPFKKAYDLKRWTKQALTKHNNKDDDFDAQNQAF 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3934284 3939537 - CcPI632755_10g003350.1 Cco10g0335 189293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0335 575 Pfam Voltage-dependent anion channel 209 514 IPR004695 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g0335 575 Gene3D - 206 524 IPR038665 -
Cco10g0335 575 MobiDBLite consensus disorder prediction 20 80 - -
Cco10g0335 575 MobiDBLite consensus disorder prediction 146 168 - -
Cco10g0335 575 CDD TDT_SLAC1_like 209 513 - -
Cco10g0335 575 PANTHER S-TYPE ANION CHANNEL SLAH3 147 536 IPR030183 GO:0006873(InterPro)|GO:0008308(InterPro)|GO:0016020(InterPro)|GO:0090332(PANTHER)
Cco10g0335 575 MobiDBLite consensus disorder prediction 62 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0335 K26672 - - csv:101212660 991.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0082 Cco-Chr1:614172 Cco10g0335 Cco-Chr10:3934284 1.40E-126 dispersed
Cco05g2101 Cco-Chr5:29985686 Cco10g0335 Cco-Chr10:3934284 2.50E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g448 Blo02g01074 . . . Bpe05g00612 . . . Cmo06g00762 Cmo16g01074 . . . . . Cpe14g00848 . . . . . . . . Cla10g00315 Cam10g0330 Cec10g0343 Cco10g0335 Clacu10g0326 Cmu10g1166 Cre10g0576 . . Cone6ag0727 Cone9ag0733 Lsi07g01364 . . Cme06g02649 . . . . . . Bma05g00792 . . . . Cma06g00740 Cma16g01028 . Car16g00979 Cpe08g00780 . . . . . . . . . . . . . . . . Csa03g00338 Chy06g01987 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008638 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35