Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0345 ATGGCTTCCCATTTCCCTCGTCGGAGCTTTGTCGCCGTCATCTTCTTCTTGTCGTTTACGATGCCGGAGATGACAATGAAATCGGTGCTCGCCATCTTTCGACCAAGCCCTTGGCAGCTCGCCCATGCCACCTTCTATGGTGATGAGACAGCATCGGAAACAATGGGAGGAGCTTGTGGTTATGGAAATTTGTTCACAAACGGCTACGGCGTCGACACGGTGGCTCTAAGCTCTACTCTCTTTAATAATGGCTACGCTTGTGGAACTTGCTTTCAAATCAAATGCGCCCAATCCAAAGCTTGTTATCCTAATGTTGCTTTCACGACGGTGACGGCGACCAACCTTTGCCCGCCGAATTGGGCCAAACCTTCCAACGCCGGTGGATGGTGCAACCCACCGAGGGTTCACTTCGACATGTCAAAGCCAGCCTTCATGAAGATCGCCAACTGGAAGGCCGGGATCATCCCCGTCGCGTACCGACGAGTACCGTGCGGCAAAAAAGGTGGCCTTCGATTCACACTTCAGGGAAATGGCTACTGGCTTTTGGCGTACGTAATGAACGTCGGCGGCGGCGGAGACGTGTCGGGAATGTGGGTGAAAGGTAGCAAAACAGGGTGGATCAAAATGAGCCATAATTGGGGAGCTTCATATCAAGCATTTTCAACTTTGGTTGGCCAATCTTTGTCTTTTAGAATCACTTCTTACACAACCAAAGAGACCATCACAGCTTGGAATGTTGCACCTTCTAATTGGAGGTTTGGTTCGACCTACAATGCCAACGTCAACTTTCGCTAA 795 50.44 MASHFPRRSFVAVIFFLSFTMPEMTMKSVLAIFRPSPWQLAHATFYGDETASETMGGACGYGNLFTNGYGVDTVALSSTLFNNGYACGTCFQIKCAQSKACYPNVAFTTVTATNLCPPNWAKPSNAGGWCNPPRVHFDMSKPAFMKIANWKAGIIPVAYRRVPCGKKGGLRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIKMSHNWGASYQAFSTLVGQSLSFRITSYTTKETITAWNVAPSNWRFGSTYNANVNFR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4001873 4003455 - CcPI632755_10g003450.1 Cco10g0345 189303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0345 264 Gene3D - 165 264 IPR036749 -
Cco10g0345 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Cco10g0345 264 PANTHER EXPANSIN-A15 23 259 IPR002963 GO:0009664(InterPro)
Cco10g0345 264 CDD DPBB_EXPA_N 37 164 - -
Cco10g0345 264 Gene3D - 23 164 IPR036908 -
Cco10g0345 264 Pfam Lytic transglycolase 73 159 IPR009009 -
Cco10g0345 264 SUPERFAMILY Barwin-like endoglucanases 29 187 IPR036908 -
Cco10g0345 264 SMART dpbb_1 73 159 IPR007112 -
Cco10g0345 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664(InterPro)
Cco10g0345 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664(InterPro)
Cco10g0345 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664(InterPro)
Cco10g0345 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664(InterPro)
Cco10g0345 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664(InterPro)
Cco10g0345 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664(InterPro)
Cco10g0345 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664(InterPro)
Cco10g0345 264 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Cco10g0345 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
Cco10g0345 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Cco10g0345 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576(InterPro)
Cco10g0345 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Cco10g0345 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576(InterPro)
Cco10g0345 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Cco10g0345 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Cco10g0345 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0345 Cco-Chr10:4001873 Cco11g0583 Cco-Chr11:6253081 1.00E-69 dispersed
Cco01g0339 Cco-Chr1:3343207 Cco10g0345 Cco-Chr10:4001873 6.80E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0345 - - - 0.0