Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0347 ATGGCTGGTCGAATTTTTGAAACCTTGTCCTTTGGTGGGTCTCAACATGGTCAAGGTAATCAATCTTTGCCATTTTCCTCTGGAAATGCTTCATTGAAGATCTTGCTATTGCATGGTTATTTAGACATTTGGGTTAAAGGAGCTAAGAACCTTCCCAATTTGGATATGTTTCACAAGACTCTTGGGGATATGTTTTCCAAAGTATCCTTTAAGGGTTCCAAAAACAGTGATGGGCAAAAGCCTCAAAAAGTTACTAGTGATCCCTATGTCACTATTTCTGTGTCAAATGCTGTGATTGGAAGAACTTTTGTGATTGATAACAATGAAAATCCTGTTTGGATGCAACATTTTAATGTTCCTGTAGCTCATTATGGTGCTGAGGTGCATTTTGTTGTTAAAGACCATGATGTTGTAGGATCACAAATCATGGGTGTTGTTGCAATTCCTGTGGAACAATTGTATTCCGGAGCCATAGTTGATGGAACTTACCCAATCTTAAATAGCAGTAGGAAGCCCTGTAAGCCTGGGGCAGTCTTGAGTTTGTCGATTCAGTATACTCCGGCTGACCAAGCGGCCATTTTTCATGGTGGAATGTATGCGTCTCCTGATCATCAGGGAGTTTCAGGCACATATTTCCCTCTTAGGAAGGGGGGTAAAGTTACATTGTACCAAGATGCCCATGTTGACGATGGTTGTCTTCCAACAGATTTTAGGCTTCATGGTGGGGTTCAATATGAACATAGGAGCTGCTGGGATGACATCTCTGAATCGATTAGTCAGGCTCGCCGTTTGATCTATATTACAGGCTGGTCTGTGTACCATAGTGTTAAATTGGTTAGAGATGGAACGGCCAAAGAATGTATGTTAGGGGACCTTCTTAAAGCCAAGTCCCAAGAAGGAGTAAGAGTATTGCTTCTTATATGGGACGATCCAACTTCAACTAGTATGTTGGGATATAAGACGGTTGGGATGATGAATACAAATGATGAGGAGACTCGTCGGTTTTTTAAGAACTCATCAGTCCAAGTGATTTTGTGCCCACGATCAGGTGGAAAAGGTCATAGTTGGATTAAAAAACAGGAAGCTGGAACCATCTATACCCACCATCAGAAGACAGTTATTGTAGATGCTGATGCTGGAAATTACAAAAGAAAAATTGTAGCTTTTGTTGGAGGTCTTGATTTATGTTTGGGCCGATATGATACCTCGAGACATCCTCTTTTCCGGACATTGCAAACTACACATGTGGATGACTTCCATAACCCTAATTTTACGGGACCAACTACTGGTTGTCCAAGAGAACCATGGCATGATTTGCACTCCAAGATTGATGGTCCAGCGGCGTATGACGTCCTTGCAAATTTTGAGGAGCGCTGGATGAGAGCTTCAGAGCCTCATGGGCTTAAAAAGCTAAAGAGGTTACATGAAGATGTATTGCTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATAACTGATGCTTCTCAACTTTGTAATAATGATCCAGAAGCTTGGAACGTCCAGATTTTTCGCTCAATTGATTCCAACTCCGTAAAAGGATTTCCTGACAAACCAAAAGATGCTATAAGTAGGAACTTAGTATGTGGAAAGAATGTGATGATAGACATGAGTATACATTCAGCATATGTTAGTGCAATTCGAGCTGCTCAACGCTTCATTTACATCGAAAACCAGTACTTCCTTGGGTCATCTTATAATTGGAGTGCTCACAAAGACTTAGGGGCTAATAACTTAATACCAATGGAAATAGCCCTTAAGATTGTGGAGAAAATCAAAGCTAAAGAAAGGTTTTCAGCATATGTGGTTATTCCCATGTGGCCAGAAGGTGCTCCTACAAGCACTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTATGAAATGATATACAAGGCGTTAGAGGAGGTTGGACTTCATAAAACATATGAGCCTCAAGACTACTTAAATTTCTTTTGCCTTGGAAACCGTGAAGTGCTCGATGTCAGAGACGGTGTTGAAGCCGGGAATGGAGAAAAGAATGCTCAATCACTTGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTACGTCTTATTGGGATCGGCAAATATCAATCAACGGTCCCTTGAAGGTACCAGAGACACTGAAATAGCAATGGGCGCATATCAGCCCCGTCATACATGGTCATCGAGAAAACGCTCGAGCCCACGTGGTCAGGTCTATGGATATAGAATGTCTTTATGGGCAGAGCACACAGGAACAATGGAGGAATGTTTTGAAAGACCAGAGAGTATTGAATGTGTAAGAAGAATCAGGTCATTGGGTGAGAGAAATTGGAGGCAATATGCAGCTGAGGAAGTGAGTGAAATGAGAAGTCATCTTCTTAAATATCCATTGCAAGTTGATCCAACTGGTAAGGTGACCTATCTTCCTGGTTCTGAAACCTTCCCTGACCTTGGTGGCAACATATTAGGAACATTCACAGTCATACAAGAAAATCTTACAATTTGA 2556 41.08 MAGRIFETLSFGGSQHGQGNQSLPFSSGNASLKILLLHGYLDIWVKGAKNLPNLDMFHKTLGDMFSKVSFKGSKNSDGQKPQKVTSDPYVTISVSNAVIGRTFVIDNNENPVWMQHFNVPVAHYGAEVHFVVKDHDVVGSQIMGVVAIPVEQLYSGAIVDGTYPILNSSRKPCKPGAVLSLSIQYTPADQAAIFHGGMYASPDHQGVSGTYFPLRKGGKVTLYQDAHVDDGCLPTDFRLHGGVQYEHRSCWDDISESISQARRLIYITGWSVYHSVKLVRDGTAKECMLGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTNDEETRRFFKNSSVQVILCPRSGGKGHSWIKKQEAGTIYTHHQKTVIVDADAGNYKRKIVAFVGGLDLCLGRYDTSRHPLFRTLQTTHVDDFHNPNFTGPTTGCPREPWHDLHSKIDGPAAYDVLANFEERWMRASEPHGLKKLKRLHEDVLLKIERIPEILGITDASQLCNNDPEAWNVQIFRSIDSNSVKGFPDKPKDAISRNLVCGKNVMIDMSIHSAYVSAIRAAQRFIYIENQYFLGSSYNWSAHKDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGAPTSTPIQRILFWQSRTMQMMYEMIYKALEEVGLHKTYEPQDYLNFFCLGNREVLDVRDGVEAGNGEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVLLGSANINQRSLEGTRDTEIAMGAYQPRHTWSSRKRSSPRGQVYGYRMSLWAEHTGTMEECFERPESIECVRRIRSLGERNWRQYAAEEVSEMRSHLLKYPLQVDPTGKVTYLPGSETFPDLGGNILGTFTVIQENLTI 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4019268 4025266 + CcPI632755_10g003470.1 Cco10g0347 189305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0347 851 ProSiteProfiles C2 domain profile. 15 163 IPR000008 -
Cco10g0347 851 Pfam Phospholipase D Active site motif 698 723 IPR001736 GO:0003824(InterPro)
Cco10g0347 851 Pfam Phospholipase D Active site motif 366 396 IPR001736 GO:0003824(InterPro)
Cco10g0347 851 SMART C2_3c 40 162 IPR000008 -
Cco10g0347 851 Pfam Phospholipase D C terminal 771 841 IPR024632 -
Cco10g0347 851 SUPERFAMILY Phospholipase D/nuclease 206 463 - -
Cco10g0347 851 SUPERFAMILY Phospholipase D/nuclease 533 783 - -
Cco10g0347 851 PIRSF PLD_plant 26 851 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cco10g0347 851 PANTHER PHOSPHOLIPASE D 36 841 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cco10g0347 851 FunFam Phospholipase D 512 742 - -
Cco10g0347 851 Gene3D Endonuclease Chain A 239 478 - -
Cco10g0347 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 696 723 IPR001736 GO:0003824(InterPro)
Cco10g0347 851 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 187 IPR035892 -
Cco10g0347 851 Gene3D Endonuclease Chain A 507 759 - -
Cco10g0347 851 CDD C2_plant_PLD 35 186 - -
Cco10g0347 851 FunFam Phospholipase D delta 241 478 - -
Cco10g0347 851 Gene3D C2 domain 26 186 IPR035892 -
Cco10g0347 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 364 399 IPR001736 GO:0003824(InterPro)
Cco10g0347 851 SMART pld_4 696 723 IPR001736 GO:0003824(InterPro)
Cco10g0347 851 SMART pld_4 364 399 IPR001736 GO:0003824(InterPro)
Cco10g0347 851 Pfam C2 domain 39 164 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0019 Cco-Chr6:197392 Cco10g0347 Cco-Chr10:4019268 0.00E+00 dispersed
Cco09g0271 Cco-Chr9:2413920 Cco10g0347 Cco-Chr10:4019268 9.60E-199 dispersed
Cco10g0347 Cco-Chr10:4019268 Cco08g1583 Cco-Chr8:27393193 3.90E-251 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0347 K01115 - csv:101208016 1684.08