Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0353 ATGGCGTCTTCTTCGGGCAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAGGGTCGTTGATATTGTGGGTAATGAAGATGCAGTTCGTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCTCCAGGAACGGGGAAGACAACCAGTATTTTAGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGCGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGGTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTCTCCATCGTTCGTGAGACTGCAAAAGCGCCATGA 999 44.84 MASSSGSSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILARLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4078359 4086556 - CcPI632755_10g003530.1 Cco10g0353 189311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0353 332 CDD HLD_clamp_RFC 171 233 IPR047854 -
Cco10g0353 332 FunFam Replication factor C subunit 4 8 171 - -
Cco10g0353 332 Gene3D - 172 235 - -
Cco10g0353 332 CDD AAA 29 166 - -
Cco10g0353 332 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 14 325 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cco10g0353 332 FunFam Replication factor C subunit 4 172 235 - -
Cco10g0353 332 FunFam replication factor C subunit 2 236 328 - -
Cco10g0353 332 Gene3D - 7 171 IPR027417 -
Cco10g0353 332 Pfam Replication factor C C-terminal domain 236 321 IPR013748 -
Cco10g0353 332 Gene3D - 236 328 - -
Cco10g0353 332 SMART AAA_5 46 172 IPR003593 GO:0016887(InterPro)
Cco10g0353 332 SUPERFAMILY post-AAA+ oligomerization domain-like 235 326 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cco10g0353 332 Pfam ATPase family associated with various cellular activities (AAA) 50 168 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco10g0353 332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 234 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0722 Cco-Chr8:18796537 Cco10g0353 Cco-Chr10:4078359 2.50E-53 dispersed
Cco10g0353 Cco-Chr10:4078359 Cco11g1646 Cco-Chr11:29319839 3.60E-51 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0353 K10755 - csv:101208984 629.017