Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0354 ATGGCATCTTCAAGGTCCCCGAATGGATCTTCTGATGATATCCTCGATACCTCCCCTTTGATGGGGAATTCGAACCGGTCGCCGGACGATACGCATTCGGGTCGGAGATTTGTGCAGAGGCAAAGTCTACGTCAGGCGGCGAGGTTTCTTAGGCAGGCCAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTTATTCTTGACATCGTCTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTCAGCCGCAACGAGTCTCCTTCAATGCCTTTGAGACTGTGGATCGTGGGGTATGCGTTTCAATGCATTCTCCATATGGTGTGTGTTTGTGTTGAGTATCGTCGCCGCCGGCAGCTACGATATTCGACCTTCAATTCAATGGACGAGGGAAATTCTGCACGCGGGATTTCGGGTTTGGGCTCGAGGGCAAACTCGAGTCATTATGTATCATTGGCTCAATTGGATGATAACGATAGCAGTGTAGCAAAGCACCTTGAATCTGCAAATACCATGTTCTCCTTCATCTGGTGGATTATTGGATTCTATTGGGTATCTGCAGGAGGACAATCTTTAGCACACGTCTCTCCTCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGAAGGTGCAACCAAAGAAGATGTTGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGACGACGCCGAGAAATTCTCCACTGATGTACAGGAACCTCTTGGTGGGATAATGACCGAGTGTGGTACAGATTCACCCATTGAACGCGCCCTCTCGCAGGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCATATGAGGATGGTGTCGAGCTACGAGAGCTCCCATGTGGTCACCACTTCCACTGTGCCTGCGTCGATAAGTGGCTGTATATTAACGCCACCTGTAAGTTGTGTGTAGTTGTGAAAGAGATCAATCAGCAAACTCAGTATAGGGCCCTTTCTTTTGCTGCCGTTGCTATTGTTGTTGTAGTGAATATTATTCTTTGCTGTAGTTCTTGCTCTGCTCAGGTTGCTCGTGTAAATGGCGATATGAAAGGTTCTCTGTAA 1257 47.41 MASSRSPNGSSDDILDTSPLMGNSNRSPDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRNESPSMPLRLWIVGYAFQCILHMVCVCVEYRRRRQLRYSTFNSMDEGNSARGISGLGSRANSSHYVSLAQLDDNDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDDAEKFSTDVQEPLGGIMTECGTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCKLCVVVKEINQQTQYRALSFAAVAIVVVVNIILCCSSCSAQVARVNGDMKGSL 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4092079 4097463 + CcPI632755_10g003540.1 Cco10g0354 189312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0354 418 Pfam Ring finger domain 327 368 IPR001841 -
Cco10g0354 418 MobiDBLite consensus disorder prediction 1 36 - -
Cco10g0354 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 373 IPR013083 -
Cco10g0354 418 SMART ring_2 328 368 IPR001841 -
Cco10g0354 418 PANTHER TARGET OF ERK KINASE MPK-1 43 368 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cco10g0354 418 MobiDBLite consensus disorder prediction 1 28 - -
Cco10g0354 418 SUPERFAMILY RING/U-box 319 371 - -
Cco10g0354 418 ProSiteProfiles Zinc finger RING-type profile. 328 368 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0218 Cco-Chr5:1693574 Cco10g0354 Cco-Chr10:4092079 1.20E-120 dispersed
Cco10g0354 Cco-Chr10:4092079 Cco10g1640 Cco-Chr10:29802448 1.70E-66 dispersed
Cco10g0354 Cco-Chr10:4092079 Cco10g2089 Cco-Chr10:34246875 8.10E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0354 - - - 0.0