Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0358 ATGTGGCTTCTTTTGATTGGAGCTATTGTTGTTTTAAGTTTTACACACTGGCTTTATAGTTGGAGAAATCCCAAATGTAATGGAAAACTTCCACCAGGTTCAATGGGTTTGCCCTTACTTGGTGAAACCCTGCAGTTCTTTGCTCCCAATACCTCCTCTGATATTCCTCCTTTCATTAGAAAAAGAATGGATAGGTATGGACCTATATTCAGAACAAGTTTGGTGGGAAGACCGCTGATTGTCTCAACAGACCCCGACTTGAATTACTTTATCTTTCAACAAGAGGGACAATTGTTCCAGAGCTGGTATCCTGATACCTTCACAGAGATATTTGGAAGACAAAATGTTGGTTCATTGCACGGCTTCATGTATAAATATCTAAAGAACATGGTTCTTCATCTTTTTGGCCCTGAAAGTCTGAGAAAGATGATACCTGAAGTTGAGGCTGTAGCAACCAGAAGATTGAGACAATGGTCATCTCATGACTCAGTTGAATTGAAGGATAAGACTGCAAGTATGATTTTTGATCTGACTGCAAAGAAGCTGATTAGTTATGATTCAGAAAATTCTTCAGAGAATTTGAGAGAGAACTTTGTTGCATTCATACAAGGCTTGATCTCCTTCCCTCTAAATGTTCCCGGAACTGCTTATAACAAATGCTTACAGGGTAGGAAAAGAGCAATGAGGATGCTGAAGAACATGTTACAAGAAAGGCGGACAAATCCAAGAAAACAACAAATTGATTTTTTCGATTTTGTTCTTGAAGAACTGGAGAAAGATGGAACTCTTCTTACTGAGGAAATTGCTTTGGACCTTATGTTTGTACTACTTTTTGCAAGCTTTGAAACTACTTCACTTGCTATTACAGCAGCCATCAAATTTCTCCTCAACAATCCTCATGTGCTGGAGGAGCTGACGGCTGAACATGAGGGAATATTGAAGAGAAGGGAAAATCCAGATTCTGGGCTTACATGGGGGGAATACAAATCCATGACGTTCACATTTCAGTTTATCAATGAAACTGTTAGACTGGCAAATATAGTTCCAGGCATCTTTCGAAAAGCACTAAAAGACATCCAGTTTAAGGGATATACTATCCCATCTGGTTGGGCTGTTATGGTCTGCCCTCCAGCCGTGCACTTAAATCCAGAAAAATACGTCGACCCCCTTGCTTTTAACCCGTGGCGATGGGAGAAATCTGAACTGAATGGAGCCTCTAAACATTTCATGGCTTTTGGTGGTGGCATGAGGTTCTGTGTTGGTACAGATTTTACCAAAGTGCAAATGGCTGTTTTTCTCCATTGCCTGGTTACAAAGTACAGGTTCAAAGCAATCAAAGGGGGCAACATCGTTCGAACTCCCGGTTTACAGTTTCCCAATGGCTTTCACGTTCAGATAATGGAGAAATAA 1410 40.5 MWLLLIGAIVVLSFTHWLYSWRNPKCNGKLPPGSMGLPLLGETLQFFAPNTSSDIPPFIRKRMDRYGPIFRTSLVGRPLIVSTDPDLNYFIFQQEGQLFQSWYPDTFTEIFGRQNVGSLHGFMYKYLKNMVLHLFGPESLRKMIPEVEAVATRRLRQWSSHDSVELKDKTASMIFDLTAKKLISYDSENSSENLRENFVAFIQGLISFPLNVPGTAYNKCLQGRKRAMRMLKNMLQERRTNPRKQQIDFFDFVLEELEKDGTLLTEEIALDLMFVLLFASFETTSLAITAAIKFLLNNPHVLEELTAEHEGILKRRENPDSGLTWGEYKSMTFTFQFINETVRLANIVPGIFRKALKDIQFKGYTIPSGWAVMVCPPAVHLNPEKYVDPLAFNPWRWEKSELNGASKHFMAFGGGMRFCVGTDFTKVQMAVFLHCLVTKYRFKAIKGGNIVRTPGLQFPNGFHVQIMEK 469
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 4127813 4130817 - CcPI632755_10g003580.1 Cco10g0358 189316
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0358 469 PANTHER CYTOCHROME P450 26 29 440 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
Cco10g0358 469 Pfam Cytochrome P450 31 452 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 CDD CYP90-like 62 466 - -
Cco10g0358 469 Gene3D Cytochrome P450 22 468 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 SUPERFAMILY Cytochrome P450 27 465 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 412 421 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco10g0358 469 PRINTS P450 superfamily signature 279 296 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 PRINTS P450 superfamily signature 419 430 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 PRINTS P450 superfamily signature 410 419 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 PRINTS P450 superfamily signature 336 347 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 PRINTS E-class P450 group I signature 419 442 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 PRINTS E-class P450 group I signature 335 353 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 PRINTS E-class P450 group I signature 288 314 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 PRINTS E-class P450 group I signature 375 399 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 PRINTS E-class P450 group I signature 268 285 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 PRINTS E-class P450 group I signature 409 419 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco10g0358 469 FunFam Cytochrome P450 family protein 22 468 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0158 Cco-Chr6:1634730 Cco10g0358 Cco-Chr10:4127813 3.30E-124 dispersed
Cco09g0055 Cco-Chr9:478274 Cco10g0358 Cco-Chr10:4127813 7.70E-71 dispersed
Cco09g0966 Cco-Chr9:9113550 Cco10g0358 Cco-Chr10:4127813 3.00E-58 dispersed
Cco10g0358 Cco-Chr10:4127813 Cco10g1299 Cco-Chr10:25917121 1.80E-80 dispersed
Cco10g0351 Cco-Chr10:4066037 Cco10g0358 Cco-Chr10:4127813 8.20E-60 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0358 - - - 0.0