Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g0358 | ATGTGGCTTCTTTTGATTGGAGCTATTGTTGTTTTAAGTTTTACACACTGGCTTTATAGTTGGAGAAATCCCAAATGTAATGGAAAACTTCCACCAGGTTCAATGGGTTTGCCCTTACTTGGTGAAACCCTGCAGTTCTTTGCTCCCAATACCTCCTCTGATATTCCTCCTTTCATTAGAAAAAGAATGGATAGGTATGGACCTATATTCAGAACAAGTTTGGTGGGAAGACCGCTGATTGTCTCAACAGACCCCGACTTGAATTACTTTATCTTTCAACAAGAGGGACAATTGTTCCAGAGCTGGTATCCTGATACCTTCACAGAGATATTTGGAAGACAAAATGTTGGTTCATTGCACGGCTTCATGTATAAATATCTAAAGAACATGGTTCTTCATCTTTTTGGCCCTGAAAGTCTGAGAAAGATGATACCTGAAGTTGAGGCTGTAGCAACCAGAAGATTGAGACAATGGTCATCTCATGACTCAGTTGAATTGAAGGATAAGACTGCAAGTATGATTTTTGATCTGACTGCAAAGAAGCTGATTAGTTATGATTCAGAAAATTCTTCAGAGAATTTGAGAGAGAACTTTGTTGCATTCATACAAGGCTTGATCTCCTTCCCTCTAAATGTTCCCGGAACTGCTTATAACAAATGCTTACAGGGTAGGAAAAGAGCAATGAGGATGCTGAAGAACATGTTACAAGAAAGGCGGACAAATCCAAGAAAACAACAAATTGATTTTTTCGATTTTGTTCTTGAAGAACTGGAGAAAGATGGAACTCTTCTTACTGAGGAAATTGCTTTGGACCTTATGTTTGTACTACTTTTTGCAAGCTTTGAAACTACTTCACTTGCTATTACAGCAGCCATCAAATTTCTCCTCAACAATCCTCATGTGCTGGAGGAGCTGACGGCTGAACATGAGGGAATATTGAAGAGAAGGGAAAATCCAGATTCTGGGCTTACATGGGGGGAATACAAATCCATGACGTTCACATTTCAGTTTATCAATGAAACTGTTAGACTGGCAAATATAGTTCCAGGCATCTTTCGAAAAGCACTAAAAGACATCCAGTTTAAGGGATATACTATCCCATCTGGTTGGGCTGTTATGGTCTGCCCTCCAGCCGTGCACTTAAATCCAGAAAAATACGTCGACCCCCTTGCTTTTAACCCGTGGCGATGGGAGAAATCTGAACTGAATGGAGCCTCTAAACATTTCATGGCTTTTGGTGGTGGCATGAGGTTCTGTGTTGGTACAGATTTTACCAAAGTGCAAATGGCTGTTTTTCTCCATTGCCTGGTTACAAAGTACAGGTTCAAAGCAATCAAAGGGGGCAACATCGTTCGAACTCCCGGTTTACAGTTTCCCAATGGCTTTCACGTTCAGATAATGGAGAAATAA | 1410 | 40.5 | MWLLLIGAIVVLSFTHWLYSWRNPKCNGKLPPGSMGLPLLGETLQFFAPNTSSDIPPFIRKRMDRYGPIFRTSLVGRPLIVSTDPDLNYFIFQQEGQLFQSWYPDTFTEIFGRQNVGSLHGFMYKYLKNMVLHLFGPESLRKMIPEVEAVATRRLRQWSSHDSVELKDKTASMIFDLTAKKLISYDSENSSENLRENFVAFIQGLISFPLNVPGTAYNKCLQGRKRAMRMLKNMLQERRTNPRKQQIDFFDFVLEELEKDGTLLTEEIALDLMFVLLFASFETTSLAITAAIKFLLNNPHVLEELTAEHEGILKRRENPDSGLTWGEYKSMTFTFQFINETVRLANIVPGIFRKALKDIQFKGYTIPSGWAVMVCPPAVHLNPEKYVDPLAFNPWRWEKSELNGASKHFMAFGGGMRFCVGTDFTKVQMAVFLHCLVTKYRFKAIKGGNIVRTPGLQFPNGFHVQIMEK | 469 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 4127813 | 4130817 | - | CcPI632755_10g003580.1 | Cco10g0358 | 189316 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g0358 | 469 | PANTHER | CYTOCHROME P450 26 | 29 | 440 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| Cco10g0358 | 469 | Pfam | Cytochrome P450 | 31 | 452 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | CDD | CYP90-like | 62 | 466 | - | - | |
| Cco10g0358 | 469 | Gene3D | Cytochrome P450 | 22 | 468 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | SUPERFAMILY | Cytochrome P450 | 27 | 465 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 412 | 421 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco10g0358 | 469 | PRINTS | P450 superfamily signature | 279 | 296 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | PRINTS | P450 superfamily signature | 419 | 430 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | PRINTS | P450 superfamily signature | 410 | 419 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | PRINTS | P450 superfamily signature | 336 | 347 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | PRINTS | E-class P450 group I signature | 419 | 442 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | PRINTS | E-class P450 group I signature | 335 | 353 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | PRINTS | E-class P450 group I signature | 288 | 314 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | PRINTS | E-class P450 group I signature | 375 | 399 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | PRINTS | E-class P450 group I signature | 63 | 82 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | PRINTS | E-class P450 group I signature | 268 | 285 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | PRINTS | E-class P450 group I signature | 409 | 419 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g0358 | 469 | FunFam | Cytochrome P450 family protein | 22 | 468 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g0158 | Cco-Chr6:1634730 | Cco10g0358 | Cco-Chr10:4127813 | 3.30E-124 | dispersed | |
| Cco09g0055 | Cco-Chr9:478274 | Cco10g0358 | Cco-Chr10:4127813 | 7.70E-71 | dispersed | |
| Cco09g0966 | Cco-Chr9:9113550 | Cco10g0358 | Cco-Chr10:4127813 | 3.00E-58 | dispersed | |
| Cco10g0358 | Cco-Chr10:4127813 | Cco10g1299 | Cco-Chr10:25917121 | 1.80E-80 | dispersed | |
| Cco10g0351 | Cco-Chr10:4066037 | Cco10g0358 | Cco-Chr10:4127813 | 8.20E-60 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g0358 | - | - | - | 0.0 |