Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0360 ATGCTTATGGACCCTTCTTTCAATTCCTCTCACCAAGAACAACAGCAAGAACAACAAGAACAAGATCAAGAAATTACCACTTCCAATCATTCTTTCCAAATGCGTCAATTACTAATCCGTTGTGCTCATTTCATTTCTCAATCTGATTTCCTTTCAGCTCATCATCTTCTTTCAATTCTCTCTTCAAATTCCTCTCCTTATGGTGATTCAACTGAAAGATTACTTCATTACTTCTCTTCTTCCCTTTCTCATCGCCTCCCTTCAAATTCTTCTTTTGTTCATGATCATCATCATCATCAAGATAATGATGATGAGAGCAGGATTCAATCTTGTTACTTATCATTGAATCAAATCACACCCTTTATTAGATTTACTCATTTGACTGCAAATCAAGCCATTTTGGAAGGTATTGAAGAAAGTGGGATGATTCATGTTTTGGATTTTGATATTATGCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGATCGTTTTCCTTCTCCTATGCTTCGTATTACTGCTACTGGTCTTGATCTTAACTTCCTTCATAAGACTGGTGATAGGCTTTCTAAATTTGCTCAATCACTTGGTTTGAGGTTTCAGTTTCATCCTCTTCTTCTTCTTCATGATCGCGATCATCACCGTGTTATCCCCGCCGCTCTCACGCTCTTCCCCGACGAAGCTCTCGCCGTCAACTGCGTTCTCTACTTGCACAGGCTAATGAAGGAGGATGTTCGAGTATTGCTTCATAAAATCAAGGCTTTGAATCCAAAAGTGGTGACTATAGCTGAAAAGGAAGCAAATTTCAACCACCCATTATTCATGCAAAGATTTATAGAGGCATTGAATCATTACTCTTTAATATTTGATTCATTAGAAGCAACTTTGCCTCCAAATAGTAGGGAGAGATTGGCAGTGGAGCAAGTTTGGTTTGGGAGGGAAATAGACGACGTCGTTTCAGGAGAAGGGAATAAGAAGAGAAGGCAACACTATGAAAGGTATGAATCATGGGAAATAATGCTTAAAAGTTTGGGATTTTCTAATGTTCCTTTAAGCCCTTTTGCTCTTTCACAAGCCAAACTTCTTCTTAGACTTCATTACCCTTCTGAAGGTTACCATCTTCAAATCCTTCATGATTCCCTTTTCCTTGGTTGGCAAAATCAACCCCTTTTTTCAGTCTCTTCATGGCATTGA 1200 38.83 MLMDPSFNSSHQEQQQEQQEQDQEITTSNHSFQMRQLLIRCAHFISQSDFLSAHHLLSILSSNSSPYGDSTERLLHYFSSSLSHRLPSNSSFVHDHHHHQDNDDESRIQSCYLSLNQITPFIRFTHLTANQAILEGIEESGMIHVLDFDIMHGVQWPPLMQALADRFPSPMLRITATGLDLNFLHKTGDRLSKFAQSLGLRFQFHPLLLLHDRDHHRVIPAALTLFPDEALAVNCVLYLHRLMKEDVRVLLHKIKALNPKVVTIAEKEANFNHPLFMQRFIEALNHYSLIFDSLEATLPPNSRERLAVEQVWFGREIDDVVSGEGNKKRRQHYERYESWEIMLKSLGFSNVPLSPFALSQAKLLLRLHYPSEGYHLQILHDSLFLGWQNQPLFSVSSWH 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4204461 4206109 - CcPI632755_10g003600.1 Cco10g0360 189318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0360 399 ProSiteProfiles GRAS family profile. 25 399 IPR005202 -
Cco10g0360 399 MobiDBLite consensus disorder prediction 1 26 - -
Cco10g0360 399 Pfam GRAS domain family 34 398 IPR005202 -
Cco10g0360 399 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 398 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0010014(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0360 Cco-Chr10:4204461 Cco11g0745 Cco-Chr11:8265701 2.10E-61 dispersed
Cco10g0360 Cco-Chr10:4204461 Cco10g2105 Cco-Chr10:34362288 6.10E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60061 PF03514 GRAS 3.70E-118 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0360 K27746 - csv:101213853 678.707