Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0365 ATGAGTTCTGCTGGAGACTTTCGACCAGGCCAGAAGGTGATGATCCATATGGAAGATGAACAGGATGGTGAGCTACCAATTCCATCTGGTCTCGTTACTGGCATAAACTTTAGTGTCTCAACTCAGCAAGATACAGAGAATATAGCAGTAATGACAGTTGATGCATCCAGCGAGGTATCTGATCCTAAGTTGGGACTTCCGAATCCATCTTATCAGTGCACCACATGTGGTGCTAGCTCCCTAAAATCTTGTGAAGGACATTTTGGGGTTATCAAATTCCCATATACTATAATCCATCCTTATTTTCTCTCGGAAGTTGCACAAGTGTTGAATAAAGTTTGTCCAGGGTGTAAATCTATCAGGCAGGAACTATGGGGCAAGGTTGAGGATCCAACATCTGAATATCATCGACCTAAAGGTTGCAGATATTGTTTTGGAAGTCTAAAGGATTGGTATCCGCCTATGAGGTTTAAGCTTTCAACTACTGATATGTTCAAAAAAAGTATGATTATGGTGGAAGTGAAAGAAAATATGTCGAAGAAATATCAAAAGAGGGTGGCTAAAGGAGGCTTGCCTTCAGATTATTGGAATTTTATCCCTAAGGATGAACAACAGGAAGAAAGTTATTGTAGACCAAACAGGAAAATCCTAACGCATGCTCAGGTTCATTATTTGTTGAAAGACATTGACCCAAAGTTTCTCAAAAAGTTTGTGCCTGCAATAGATTCACTGTTTCTAAACTCTTTCCCTGTTACTCCAAACAGTCATCGTGTGACTGAAATGACACATTCATTTTCAAATGGACAGCGATTGATCTTTGATGAAAGGACCAGGGCTTACAAGAAAGTGGTTGATTTCAGAGGGACAGCTAACGAGTTAGGTTCTCGCGTTCTCGATTGTCTCAAAATTTCGAAGCTTAGCCCAGAGAAGTTACAGAGTAAAGATTTGGTTTACCAGCAAAAGAAAATTAAGGATACTGCGACTAGCTCATATGGTTTAAGATGGATCAAAGATGTTGTTCTTGGAAAGCGGAGTGACCATTGTTTTCGCATGGTTGTTGTTGGCGATCCAAACATTGAGTTAAGTGAAATTGGCATACCATGTCATGTTGCAGAGAGGTTGCAAATATCTGAACATCTGAGTTCTTGGAATATGAAGAAATTAAGTACTTCTTGTTACCTTCATCTTGTTGAAAAGGGAGAGATCTTTGTTCGTCGTGAAGGTCGTCTAGTTCGTGTACGTAATGTTCTTGAACTTAATATGGGGGACACTATATATAGGCCCCTAGCTGATGGGGATGTTGTGCTGGTTAATCGACCACCATCCATACATCAGCACTCACTTATTGCTTTATCTGTCAAGCTTCTTCCTGTCTCCTCGGTTCTTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGAGATTTTGATGGTGACTGCCTTCATGGTTATGTTCCTCAATCACTCGAAGCCCGAGTGGAAGTTAGAGAGCTGGTTTCTCTAGATAGACAGCTAATTAATGGCCAAAGTGGTAGAAATCTGCTGTCACTTAGTCATGATAGTTTAACTGCTGCTCATTTAATTATGGAAGATGGAGTTTCGTTAAATCTTTTCCAGATGCAGCAGTTGCAAATGCTCGCTTTACATCAGTTGTTGCCCCCAGCAATTTTAAAAGCTCCTTTGCTTAGAAATTGCGCTTGGACTGGTAAACAGTTATTCAGCACCCTCCTACCTCCTGATTTTGATTATTCTTCTCCTTCTCACTGTGTCCTTATTGAAAATGGAGAATTAATATCTTCGGAAGGATCTTACTGGCTCCGCGATAGTGGCAGAAACCTCTTCCAAGCGCTAATAGAACACTGTGAAGGCAAGACCCTTGACTACTTGCATGATGCTCAAGGGGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGTGTTTCATTGTCAGACTTGTACCTATCCGTGGATTCATACTCTCACAAAAACATGATGGATGATATCTTTTGTGGGTTACAAGAAGCTGAGGAAACATGTAATTTAAAGCAGCTGATGGTGGATGCACATAAAGATATCCTTACTGAAGATGACGAAGATAATCAACACGTGTTGTCTATTGCAGTGGATCGTTTAAGTTATGAGAAGCAGAAATCTGCTGCTCTAAATCAAGCTTCTGTTGATGCTTTCAAGAAAGTTTTTCGTGATATACAAAATCTAGTTTACAAGTATTCTGGTAAAGACAATTCACTTCTTACCATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTGAAACTAGTTCAGCATAGCATGTGTCTTGGCTTGCAACACTCTTTGGTTACTCTATCCTTTAGCCTTCCACATAAGCTTACGTGTTCTGCATGGAACAGCCAGAAGATGCCTCGTTATACTCAGAAGGATGGTCTTCCTGACCGTACGTCGTCTTTCATACCATATGCTGTGGTTGAAAGTTCCTTTCTCTCAGGGCTTAATCCGTTTGAATGTTTTGCTCATTCGGTGACAAATCGAGATAGCTCTTTCAGTGACAATGCTGAAGTTCCTGGCACTTTGACACGAAAACTTACATTCCTAATGCGGGATATATATACTGCATATGATGGAACAGTGAGGAATGCATATGGAAATCAGCTGGTTCAGTTTTCTTATGACATTGATAGACCTACTAGTGTCTCTAATGAATTGGATAGTGAGAACAATAATAGAGATCATGATATAGGTGGTCATCCTGTTGGATCATTGGCTGCCTGTGCCATGTCAGAAGCTGCATATAGTGCTCTGGACCAACCAATTAGTCTACTTGAAGCTTCCCCATTGCTAAACCTAAAGAGAGTGCTGGAGTGTGGTTCAAAGAGGAATAGTACCAAACAAACATTTTCATTGTTCTTATCAGAGAAACTTGCTAAACGAAGTTATGGATTTGAGTATGGAGCATTAGGAGTTAAGAACCATTTAGAAAGAGTAATGTTTAAAGATATTGTGTCTAATGTCATGATAATCTTCTCCCCACAGCCCTCCCGGAAAAAGCATTTTAGTCCTTGGGTTTGCCACTTTCATGTATGCAAGGGAATTTTGAAGAAAAGAAGATTGAAGATGAATTCTGTCATCCATTCCCTTAATATGCGGTGTGACTCTGTGAGACAAGAAGGAAGAATGAATTTGCCCTCTTTGCAAATAATAACCCAGGATTGTCCTCTAGCTGATTCACTGAGAGAAGATGGTGATACGGTGTGCTTAACTGTTACAATAGCTGAAAACACAAAAAACTCTTTCCTGCAATTAGATTTCATTCAAGATTTGCTGATTCATTTCCTTCTTGGTACAGTTATAAGAGGCTTTGCTGAGATTGACAGGGTAGACATTGCATGGAATGACCGACCGAAGGTACCAAAACTTTGTTGTAATCATGGTGAGCTCTACTTGCGGGTGACCATGTCTGGAGAAGGAAATTCAAGATTTTGGGCAACTCTTATGAATAATTGCCTCCCTGTAATGGATTTGATTGATTGGTCTCGTAGTCATCCAGATAACACCCATAGTCTCTGTTTGGCATATGGAATAGATTCTGGATGGAAGTACTTTCTCAACAGTTTGGAGTCTGCAACGTTGGATATTGGTAAAACAATACGTCTTGAACATTTGCTGCTTGTTGCAAATTCTCTTTCGGCTACAGGAGAGTTTGTTGGCTTAAATGTGAAAGGATTGTCACATCAAAGGGAACATGCTTTGGTCAAAACACCCTTTATGCAAGCTTGCTTCTCAAGTCCTGGTGCTTGTTTTGTTAAAGCTGCCAAGGCTGGAATTAAGGACAACCTGTCAGGAAGTTTAGATGCCTTGGCATGGGGGAGAATTCCTTCGCTGGGAACCGGGGGACAGTTTGATATCCTATATTCTGGGAGGGGGCATGAGCTTAATAAGCCTGTCGATGTTTATAATCTACTGGGTGGCCAAAGCATTTGTGAGAAGCAGAATGCAAAGATTGAATCCCTTGATAAGAACAATATATCTGAGAAATATAGTGCTCAGTTAGTGCTTAAAAATGGTGGTTCTACCATTAAAGGACTTAAAAAGCTGGATAGTGTATCTAAATCAATTTTAAGGGAATTTTTGACACTGAATGATATTCAGAAGCTGTCGTTTGCATTGAGAACCATTTTACACAAGTACTCTTTAAATGAAAGATTAAATGAAGTGGACAAATCAACTTTGATGATGGCTTTATACTTTCATCCTCATAGGGATCAAAAGATTGGTGTTGGAGCACAGGACATAAAGGTTGGTAACCACTCAAAGTATCAAAATACACGTTGCTTCGTATTGATACGATCAGATGGAACGACAGAAGATTTTTCGTACCACAATACTTCAGGCAGAAAAGATCTAGTGGAAGCAGCAAAGAGAAGCTCGTTCAGGCTGTGGTCTCTTCATAATTTGTGGCTTCTGTAA 4461 40.17 MSSAGDFRPGQKVMIHMEDEQDGELPIPSGLVTGINFSVSTQQDTENIAVMTVDASSEVSDPKLGLPNPSYQCTTCGASSLKSCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQELWGKVEDPTSEYHRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWNFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMTHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQSKDLVYQQKKIKDTATSSYGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIFVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSSVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIMEDGVSLNLFQMQQLQMLALHQLLPPAILKAPLLRNCAWTGKQLFSTLLPPDFDYSSPSHCVLIENGELISSEGSYWLRDSGRNLFQALIEHCEGKTLDYLHDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDAHKDILTEDDEDNQHVLSIAVDRLSYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQHSLVTLSFSLPHKLTCSAWNSQKMPRYTQKDGLPDRTSSFIPYAVVESSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFSYDIDRPTSVSNELDSENNNRDHDIGGHPVGSLAACAMSEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLAKRSYGFEYGALGVKNHLERVMFKDIVSNVMIIFSPQPSRKKHFSPWVCHFHVCKGILKKRRLKMNSVIHSLNMRCDSVRQEGRMNLPSLQIITQDCPLADSLREDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFAEIDRVDIAWNDRPKVPKLCCNHGELYLRVTMSGEGNSRFWATLMNNCLPVMDLIDWSRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDIGKTIRLEHLLLVANSLSATGEFVGLNVKGLSHQREHALVKTPFMQACFSSPGACFVKAAKAGIKDNLSGSLDALAWGRIPSLGTGGQFDILYSGRGHELNKPVDVYNLLGGQSICEKQNAKIESLDKNNISEKYSAQLVLKNGGSTIKGLKKLDSVSKSILREFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDQKIGVGAQDIKVGNHSKYQNTRCFVLIRSDGTTEDFSYHNTSGRKDLVEAAKRSSFRLWSLHNLWLL 1486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4248851 4264221 - CcPI632755_10g003650.1 Cco10g0365 189323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0365 1486 Pfam Protein of unknown function (DUF3223) 1388 1458 - -
Cco10g0365 1486 Gene3D - 675 829 IPR038120 -
Cco10g0365 1486 Pfam RNA polymerase Rpb1, domain 3 504 652 IPR007066 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco10g0365 1486 Gene3D RNA polymerase ii 375 427 - -
Cco10g0365 1486 Pfam RNA polymerase Rpb1, domain 4 718 776 IPR007083 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco10g0365 1486 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 28 1301 - -
Cco10g0365 1486 Gene3D RNA polymerase Rpb1, domain 3 509 657 IPR042102 -
Cco10g0365 1486 Gene3D - 1372 1463 - -
Cco10g0365 1486 SMART rpolaneu7 242 529 IPR006592 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco10g0365 1486 Pfam RNA polymerase Rpb1, domain 2 342 500 IPR000722 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco10g0365 1486 CDD RNAP_IV_RPD1_N 40 876 IPR040403 -
Cco10g0365 1486 Gene3D RNA polymerase II, clamp domain 28 127 IPR044893 -
Cco10g0365 1486 PANTHER DNA-DIRECTED RNA POLYMERASE 31 1302 IPR045867 GO:0001055(PANTHER)|GO:0003899(PANTHER)|GO:0003899(InterPro)|GO:0005665(PANTHER)|GO:0006351(InterPro)
Cco10g0365 1486 Gene3D - 337 508 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0365 K16250 - - csv:101214578 2737.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0786 Cco-Chr1:8253913 Cco10g0365 Cco-Chr10:4248851 3.50E-81 dispersed
Cco10g0365 Cco-Chr10:4248851 Cco10g1701 Cco-Chr10:30540681 7.80E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g409 . . Bda06g00069 . . Bpe07g00129 . . Cmo06g00731 . . . . . . . . . . . . . . . Cla10g00343 Cam10g0357 Cec10g0371 Cco10g0365 Clacu10g0358 Cmu10g1195 Cre10g0608 . . Cone6ag0744 Cone9ag0748 Lsi07g01394 . . Cme06g02680 . . . . . . . Bma12g00105 . . . . . Car06g00635 . Cpe08g00802 . . . . . . . . . . . . . . . . Csa03g00363 Chy06g01960 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005483 2 9 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 40