Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0374 ATGGCCTCCACCTCCTCCAAGAGACATGATCACTACAAAGGAATCCGCTGCCGCAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCACGTAAGACTACCCGAATATGGCTCGGTACCTACCCTACGCCGGAGATGGCTGCTGCTGCCTATGATGTCGCCGCACTCGCACTCAAGGGTTGCAATGCTGTTCTCAACTTCCCAGAATTGATTGCCTCCTACCCGGTTCCGGCTTCCTCGTCCCCAGCCGATATCCGATTTTCTGCCGCTGCTGCTGCCGCGTTGAAAAAAGTTGACGATCAAGGAGAAAATACTGACCATAGCTTTCACCACCAGTCTCCGCCAACCAATGAGTTTGTCGACGAAGAGGCACTGTTCGGAATGCCGAATCTACTTGTTGACATGGCCGAGGGAATGCTGTTGTCGCCACCACGAATGAGCTCGTCGCCGTCCCGACATGACTACTACTCATGGAACTCAAGTGGAGATGGAAATCTTTGGAGCTACCACTAG 510 53.73 MASTSSKRHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPELIASYPVPASSSPADIRFSAAAAAALKKVDDQGENTDHSFHHQSPPTNEFVDEEALFGMPNLLVDMAEGMLLSPPRMSSSPSRHDYYSWNSSGDGNLWSYH 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4367754 4368263 - CcPI632755_10g003740.1 Cco10g0374 189332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0374 169 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0374 169 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0374 169 SMART rav1_2 11 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0374 169 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677(InterPro)
Cco10g0374 169 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0374 169 FunFam Ethylene-responsive transcription factor 2 10 68 - -
Cco10g0374 169 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 168 IPR045277 GO:0003700(InterPro)
Cco10g0374 169 Pfam AP2 domain 11 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0939 Cco-Chr5:8206236 Cco10g0374 Cco-Chr10:4367754 2.10E-43 dispersed
Cco10g0374 Cco-Chr10:4367754 Cco10g1916 Cco-Chr10:32766924 5.40E-35 dispersed
Cco10g0374 Cco-Chr10:4367754 Cco01g0320 Cco-Chr1:3106950 4.10E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60062 PF00847 AP2 5.60E-11 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0374 - - - 0.0