Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0374 | ATGGCCTCCACCTCCTCCAAGAGACATGATCACTACAAAGGAATCCGCTGCCGCAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCACGTAAGACTACCCGAATATGGCTCGGTACCTACCCTACGCCGGAGATGGCTGCTGCTGCCTATGATGTCGCCGCACTCGCACTCAAGGGTTGCAATGCTGTTCTCAACTTCCCAGAATTGATTGCCTCCTACCCGGTTCCGGCTTCCTCGTCCCCAGCCGATATCCGATTTTCTGCCGCTGCTGCTGCCGCGTTGAAAAAAGTTGACGATCAAGGAGAAAATACTGACCATAGCTTTCACCACCAGTCTCCGCCAACCAATGAGTTTGTCGACGAAGAGGCACTGTTCGGAATGCCGAATCTACTTGTTGACATGGCCGAGGGAATGCTGTTGTCGCCACCACGAATGAGCTCGTCGCCGTCCCGACATGACTACTACTCATGGAACTCAAGTGGAGATGGAAATCTTTGGAGCTACCACTAG | 510 | 53.73 | MASTSSKRHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPELIASYPVPASSSPADIRFSAAAAAALKKVDDQGENTDHSFHHQSPPTNEFVDEEALFGMPNLLVDMAEGMLLSPPRMSSSPSRHDYYSWNSSGDGNLWSYH | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4367754 | 4368263 | - | CcPI632755_10g003740.1 | Cco10g0374 | 189332 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0374 | 169 | CDD | AP2 | 11 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g0374 | 169 | Gene3D | AP2/ERF domain | 10 | 68 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g0374 | 169 | SMART | rav1_2 | 11 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g0374 | 169 | SUPERFAMILY | DNA-binding domain | 11 | 68 | IPR016177 | GO:0003677(InterPro) | |
Cco10g0374 | 169 | ProSiteProfiles | AP2/ERF domain profile. | 11 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g0374 | 169 | FunFam | Ethylene-responsive transcription factor 2 | 10 | 68 | - | - | |
Cco10g0374 | 169 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 6 | 168 | IPR045277 | GO:0003700(InterPro) | |
Cco10g0374 | 169 | Pfam | AP2 domain | 11 | 59 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0939 | Cco-Chr5:8206236 | Cco10g0374 | Cco-Chr10:4367754 | 2.10E-43 | dispersed | |
Cco10g0374 | Cco-Chr10:4367754 | Cco10g1916 | Cco-Chr10:32766924 | 5.40E-35 | dispersed | |
Cco10g0374 | Cco-Chr10:4367754 | Cco01g0320 | Cco-Chr1:3106950 | 4.10E-51 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60062 | PF00847 | AP2 | 5.60E-11 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0374 | - | - | - | 0.0 |