Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0378 ATGTTGGCTGGGTGTTCTAGTTCAACATTGCTCTCGCCAAGGAATCGATTAAGAAGTGAAGCACAGCCGCCATTTCCAGCTTGCCATTTGCAGTTGCCCACTTCAATGAGCACACAGAGATTGGATTTGCCCTGCAGCTTTTCCCGTTCTAAAGACCCCTCTGCCACTGCCCGATCCCCGTCAATCCGCCCGGTTGCACTCTCCGTCGAGAAGCAGAACATCAGGCTCCCGCCGTTATCCACCACCAACCAGCAGATCAAGCAAGAGTTTTGGAATGGGAAAGGTAAGAACTTGAAGAGAATTGCAGAGCAAGTTGGGTTTGATGATGATGATTCTTCCATTAACAGCGCCAAGAGGAAGAGAGAGTGCAGAGACGACGCCGGAGATGGACTAATTCTAAGCCAATTCGGCAGTGGGGGTGGGAGTTTCTGGTTTCATCAGCCTGATGGGGATGAAGAAGGAATCTGTTTTCTTCCTGGAAGTGAAGTAATTTCTTCGCCGTCGCCGTTTTTTTCAGAGATCGCCGACTTCGGAGAAGGAAATGATGGAGAAAGCAGCCATGTAAAGGCTCAGGAAGGCTCCGGTTCGGGTTCAGGGTCGAGTTCATCATCAGAAAGTGAGAGATTTGCATTGAGAAGCAGAGTAACAACAGAGAATGTTTCAGCAGCAGCAACAACAGTGCCAGAAATTGGGAATGGAAGCTCAAGAAATCCTTCATATCATCACCATCAAGGTTCTGGTTTAGAGAATGAAAGGGAAGAAGAAGAAGGGTTTGAGCTGATAAGTCTTCTAATGGCATGTGTAGAAGCAATTGGATCAAAGAACATTGGTTTGATTAACCATTTGATAGATAAACTTGGGAGTCAAGCTTCACCAAGAGGCTTATCACCAATTACACGTTTGATTGCATATTACACAGAGGCTTTAGCAGTTAGAGTGAGCAGAGTTTGGCCACAGGTTTTTCACATAACGACACCAAGGGAATACGATCGGATGGAGGACGATACGGGGACAGCACTACGGCTGCTAAACGAGGTGAGCCCGATCCCGAAATTCATCCACTTCACAGCAAATGAGATGTTGCTAAGAGCATTTGAAGGGAAAGACAGGGTTCACATCATTGACTTTGACATAAAGCAAGGGCTACAATGGCCAAGCCTGTTCCAAAGTTTGGCATCTAGAACAAACCCTCCAAGTCATGTGCGAATCACTGGGATCGGTGAGTCAAAGCAGGAATTGAACGAAACGGGAGATAGGCTAGCAGGGTTCGCCGAGGCATTGAGGCTGCCGTTCGAGTTTCATGCCGTGGTGGACCGGTTGGAGGATGTGAGACTGTGGATGCTTCATGTCAAGGAGCAAGAAAGTGTAGGAGTGAATTGCGTGCTCCAACTTCACAAGACACTGTACGATGGCAATGGAGGAGCATTGAGAGACTTTTTGGGGCTCATAAGAAGCACAAACCCAAGTATTGTTGTCATGGCTGAGCAAGAAGCCGAGCACAATGAACCAAGGTTAGAGAGTCGAGTTGCAGCCACATTGAAGTACTATGCTGCCATATTCGATTCCCTCGATGCTAGTCTTCCACCCGATAGCTCAGCCAGGTTGAAAATTGAGGACATGTTTGGGAGGGAGATAAGGAACATGATAGCATGTGAAGGAAGGGAGAGATATGAAAGACATGTTGGATTTAAGAAATGGAAGAAGGATATGGAGCAGCAAGGAGGTCTGCAATGCGTCGGGATTTGCGACGATCGAGAGCTTCTTCAGACTCAATTCCTCTTGAAAATGTACTCATCAGCTCATGGATTCAATGTCACAAAGATTGAAGAAGAAGAAGGAGCAGCTCAAGCAATTTGCCTAACTTGGGAAGATCAGCCACTTTACACTGTCTCAGCTTGGTCAGCAGCAGAAGTTTCTGGAAGTTCATCTTCGTTTAACCATCCTACTTCTTGA 1953 46.85 MLAGCSSSTLLSPRNRLRSEAQPPFPACHLQLPTSMSTQRLDLPCSFSRSKDPSATARSPSIRPVALSVEKQNIRLPPLSTTNQQIKQEFWNGKGKNLKRIAEQVGFDDDDSSINSAKRKRECRDDAGDGLILSQFGSGGGSFWFHQPDGDEEGICFLPGSEVISSPSPFFSEIADFGEGNDGESSHVKAQEGSGSGSGSSSSSESERFALRSRVTTENVSAAATTVPEIGNGSSRNPSYHHHQGSGLENEREEEEGFELISLLMACVEAIGSKNIGLINHLIDKLGSQASPRGLSPITRLIAYYTEALAVRVSRVWPQVFHITTPREYDRMEDDTGTALRLLNEVSPIPKFIHFTANEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGESKQELNETGDRLAGFAEALRLPFEFHAVVDRLEDVRLWMLHVKEQESVGVNCVLQLHKTLYDGNGGALRDFLGLIRSTNPSIVVMAEQEAEHNEPRLESRVAATLKYYAAIFDSLDASLPPDSSARLKIEDMFGREIRNMIACEGRERYERHVGFKKWKKDMEQQGGLQCVGICDDRELLQTQFLLKMYSSAHGFNVTKIEEEEGAAQAICLTWEDQPLYTVSAWSAAEVSGSSSSFNHPTS 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4435509 4437461 + CcPI632755_10g003780.1 Cco10g0378 189336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0378 650 ProSiteProfiles GRAS family profile. 251 634 IPR005202 -
Cco10g0378 650 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 232 633 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco10g0378 650 MobiDBLite consensus disorder prediction 1 22 - -
Cco10g0378 650 MobiDBLite consensus disorder prediction 1 16 - -
Cco10g0378 650 Pfam GRAS domain family 261 633 IPR005202 -
Cco10g0378 650 MobiDBLite consensus disorder prediction 169 253 - -
Cco10g0378 650 MobiDBLite consensus disorder prediction 187 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0378 Cco-Chr10:4435509 Cco11g0745 Cco-Chr11:8265701 1.40E-67 dispersed
Cco10g0378 Cco-Chr10:4435509 Cco10g2105 Cco-Chr10:34362288 2.10E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60063 PF03514 GRAS 6.60E-122 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0378 K27749 - csv:101209060 1142.87