Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0387 | ATGCTTAGATCTTCACTGGATCTTGGGATCCGACCCCATTTGGGAGGATTCGTCTTTCGAGCTCGGGATCAAGTAGTAATGGGGAGGACTGATGATAATGTTGCTATTATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAGACCTGCCATGGACACTACCAGCAGTGATCATAAAACTGAAGAACTCTTTCTCAGGCCTCGAGAACATACGGTATCCGAAAACGCCGTTGCAAGAGGCGGGATCCCGGGTGCCAATTCTGGTGACAGAGCAACAGAGTTCGGTACGTTCTCGGAGCAGAAATTTCGTGGGGGACTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATCAGATCAACAGATCACTCTTTGAATTCAGAAGTAAAGTCTCCTTACTTGACAATACCACCTGGTCTCAGCCCAACTACATTGCTAGATTCACCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGAAAGTTCCAATTTTTAGCAAATGTTAGTAACAATCGGAGCTCGACGATGATGTCGGAGGCCAACAACAAAGGCAACAACTATCCATTCGATGATAACAGTACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTATTCTCAGTGCAGCAGCAAGCAAAACAGCTTCTGCTACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCCCATCTTGTAGAACCATCTCTGTCTTTACCCCAAAATCGAATCGGTCACCATCCTCAAGTGGGACTCTCTACATCGTACATGGAGAAGGACGATGTGGGTAAGACTGTGTCGGATGATCAAAGACCTTTTGATTCTCTGTGTGGTGGTGGTGAACATTCTTCGCCACTCGATGAGCAACCGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTAGTGGTTGCGGTGCGCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGTGAGTATCCTCGGAGTTATTACAAGTGCACACATCCAAATTGTCAGGTCAAGAAGAAAGTTGAACGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCACCAAATCGACGAGCAGCGATTGGATCTTCTGATTCCCATATCAATATGCAACCAGACATCCCTGCACAAGCAGGCCAACAGAGTGCTGAAGTTCCAGTTTGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGATGCAAGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATAGCAGTCATATTGAAACAGCTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGATATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCCTATGTAACAGAGATGAGTGGGGCCACTAGAGCTATCCGTGAGCCGAGAGTTGTCGTTCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGTTGGCGCAAATATGGACAGAAGGTTGTGAAAGGAAACCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCTGGCTGCACAGTGAGGAAGCATGTTGAGCGGGCGTCACATGACCTGAAGTCCGTGATAACCACATATGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTGGTACATCCAGTCCAGTAACGGGTCAAAACTCGACCGCAGCAATGCAAACTCATGTTCACAGGCCAGGGCCACCCCAGCCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCCTTTGGCTTTGCTGGAAGACAGCAGATGGGCACTGCCCATGGCTTTGCTTTTGGAATGAACCAACCTGGACTGGGAAATCTGACCATGGCAGCTGTTGGCCAAGCCAAGCTTCCTGTTATGCCAATGCATCCTTACTTAGCACAAGCACACCATGTTCATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA | 2316 | 46.63 | MLRSSLDLGIRPHLGGFVFRARDQVVMGRTDDNVAIIGDWVPPSPSPRTFFSAMQMLGEDIGSRPAMDTTSSDHKTEELFLRPREHTVSENAVARGGIPGANSGDRATEFGTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFQFLANVSNNRSSTMMSEANNKGNNYPFDDNSTSFAFRPSVESGSSFILSAAASKTASATILPQSCPRIEVPVPRSENSFQSHLVEPSLSLPQNRIGHHPQVGLSTSYMEKDDVGKTVSDDQRPFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGSGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRAAIGSSDSHINMQPDIPAQAGQQSAEVPVWEDSQKGIPTGAPDWMQENLEVTSSASLGPEYGNQPNPLQAQNSSHIETAEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSTAAMQTHVHRPGPPQPQNTIPRFERPAFGFAGRQQMGTAHGFAFGMNQPGLGNLTMAAVGQAKLPVMPMHPYLAQAHHVHEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM | 771 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4528770 | 4533546 | - | CcPI632755_10g003870.1 | Cco10g0387 | 189345 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0387 | 771 | Gene3D | WRKY domain | 346 | 412 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0387 | 771 | ProSiteProfiles | WRKY domain profile. | 353 | 411 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0387 | 771 | MobiDBLite | consensus disorder prediction | 629 | 647 | - | - | |
Cco10g0387 | 771 | Gene3D | WRKY domain | 554 | 620 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0387 | 771 | Pfam | WRKY DNA -binding domain | 568 | 625 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0387 | 771 | Pfam | WRKY DNA -binding domain | 353 | 409 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0387 | 771 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 221 | 647 | IPR044810 | GO:0003700(InterPro) | |
Cco10g0387 | 771 | SUPERFAMILY | WRKY DNA-binding domain | 351 | 411 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0387 | 771 | ProSiteProfiles | WRKY domain profile. | 562 | 627 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0387 | 771 | SUPERFAMILY | WRKY DNA-binding domain | 559 | 627 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0387 | 771 | FunFam | WRKY transcription factor | 343 | 412 | - | - | |
Cco10g0387 | 771 | MobiDBLite | consensus disorder prediction | 280 | 359 | - | - | |
Cco10g0387 | 771 | SMART | WRKY_cls | 352 | 410 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0387 | 771 | SMART | WRKY_cls | 567 | 626 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0387 | 771 | MobiDBLite | consensus disorder prediction | 502 | 534 | - | - | |
Cco10g0387 | 771 | FunFam | WRKY transcription factor 33 | 554 | 620 | - | - | |
Cco10g0387 | 771 | MobiDBLite | consensus disorder prediction | 621 | 647 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0288 | Cco-Chr2:2624356 | Cco10g0387 | Cco-Chr10:4528770 | 1.80E-59 | dispersed | |
Cco03g1071 | Cco-Chr3:18674904 | Cco10g0387 | Cco-Chr10:4528770 | 5.10E-83 | dispersed | |
Cco05g2663 | Cco-Chr5:34686077 | Cco10g0387 | Cco-Chr10:4528770 | 5.00E-73 | dispersed | |
Cco10g0387 | Cco-Chr10:4528770 | Cco11g0470 | Cco-Chr11:5016895 | 5.20E-69 | dispersed | |
Cco10g0387 | Cco-Chr10:4528770 | Cco10g0443 | Cco-Chr10:5212577 | 1.40E-82 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60064 | PF03106 | WRKY | 3.20E-24 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0387 | K18835 | - | csv:101207853 | 1330.85 |