Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0387 ATGCTTAGATCTTCACTGGATCTTGGGATCCGACCCCATTTGGGAGGATTCGTCTTTCGAGCTCGGGATCAAGTAGTAATGGGGAGGACTGATGATAATGTTGCTATTATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAGACCTGCCATGGACACTACCAGCAGTGATCATAAAACTGAAGAACTCTTTCTCAGGCCTCGAGAACATACGGTATCCGAAAACGCCGTTGCAAGAGGCGGGATCCCGGGTGCCAATTCTGGTGACAGAGCAACAGAGTTCGGTACGTTCTCGGAGCAGAAATTTCGTGGGGGACTTGTGGAAAGGATTGCAGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATCAGATCAACAGATCACTCTTTGAATTCAGAAGTAAAGTCTCCTTACTTGACAATACCACCTGGTCTCAGCCCAACTACATTGCTAGATTCACCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGAAAGTTCCAATTTTTAGCAAATGTTAGTAACAATCGGAGCTCGACGATGATGTCGGAGGCCAACAACAAAGGCAACAACTATCCATTCGATGATAACAGTACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTATTCTCAGTGCAGCAGCAAGCAAAACAGCTTCTGCTACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCCCATCTTGTAGAACCATCTCTGTCTTTACCCCAAAATCGAATCGGTCACCATCCTCAAGTGGGACTCTCTACATCGTACATGGAGAAGGACGATGTGGGTAAGACTGTGTCGGATGATCAAAGACCTTTTGATTCTCTGTGTGGTGGTGGTGAACATTCTTCGCCACTCGATGAGCAACCGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTAGTGGTTGCGGTGCGCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGTGAGTATCCTCGGAGTTATTACAAGTGCACACATCCAAATTGTCAGGTCAAGAAGAAAGTTGAACGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCACCAAATCGACGAGCAGCGATTGGATCTTCTGATTCCCATATCAATATGCAACCAGACATCCCTGCACAAGCAGGCCAACAGAGTGCTGAAGTTCCAGTTTGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGATGCAAGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATAGCAGTCATATTGAAACAGCTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGATATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCCTATGTAACAGAGATGAGTGGGGCCACTAGAGCTATCCGTGAGCCGAGAGTTGTCGTTCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGTTGGCGCAAATATGGACAGAAGGTTGTGAAAGGAAACCCAAATCCTAGGAGTTACTACAAGTGCACGAATCCTGGCTGCACAGTGAGGAAGCATGTTGAGCGGGCGTCACATGACCTGAAGTCCGTGATAACCACATATGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTGGTACATCCAGTCCAGTAACGGGTCAAAACTCGACCGCAGCAATGCAAACTCATGTTCACAGGCCAGGGCCACCCCAGCCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCCTTTGGCTTTGCTGGAAGACAGCAGATGGGCACTGCCCATGGCTTTGCTTTTGGAATGAACCAACCTGGACTGGGAAATCTGACCATGGCAGCTGTTGGCCAAGCCAAGCTTCCTGTTATGCCAATGCATCCTTACTTAGCACAAGCACACCATGTTCATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2316 46.63 MLRSSLDLGIRPHLGGFVFRARDQVVMGRTDDNVAIIGDWVPPSPSPRTFFSAMQMLGEDIGSRPAMDTTSSDHKTEELFLRPREHTVSENAVARGGIPGANSGDRATEFGTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFQFLANVSNNRSSTMMSEANNKGNNYPFDDNSTSFAFRPSVESGSSFILSAAASKTASATILPQSCPRIEVPVPRSENSFQSHLVEPSLSLPQNRIGHHPQVGLSTSYMEKDDVGKTVSDDQRPFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGSGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRAAIGSSDSHINMQPDIPAQAGQQSAEVPVWEDSQKGIPTGAPDWMQENLEVTSSASLGPEYGNQPNPLQAQNSSHIETAEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSTAAMQTHVHRPGPPQPQNTIPRFERPAFGFAGRQQMGTAHGFAFGMNQPGLGNLTMAAVGQAKLPVMPMHPYLAQAHHVHEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4528770 4533546 - CcPI632755_10g003870.1 Cco10g0387 189345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0387 771 Gene3D WRKY domain 346 412 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0387 771 ProSiteProfiles WRKY domain profile. 353 411 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0387 771 MobiDBLite consensus disorder prediction 629 647 - -
Cco10g0387 771 Gene3D WRKY domain 554 620 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0387 771 Pfam WRKY DNA -binding domain 568 625 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0387 771 Pfam WRKY DNA -binding domain 353 409 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0387 771 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 221 647 IPR044810 GO:0003700(InterPro)
Cco10g0387 771 SUPERFAMILY WRKY DNA-binding domain 351 411 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0387 771 ProSiteProfiles WRKY domain profile. 562 627 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0387 771 SUPERFAMILY WRKY DNA-binding domain 559 627 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0387 771 FunFam WRKY transcription factor 343 412 - -
Cco10g0387 771 MobiDBLite consensus disorder prediction 280 359 - -
Cco10g0387 771 SMART WRKY_cls 352 410 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0387 771 SMART WRKY_cls 567 626 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0387 771 MobiDBLite consensus disorder prediction 502 534 - -
Cco10g0387 771 FunFam WRKY transcription factor 33 554 620 - -
Cco10g0387 771 MobiDBLite consensus disorder prediction 621 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0288 Cco-Chr2:2624356 Cco10g0387 Cco-Chr10:4528770 1.80E-59 dispersed
Cco03g1071 Cco-Chr3:18674904 Cco10g0387 Cco-Chr10:4528770 5.10E-83 dispersed
Cco05g2663 Cco-Chr5:34686077 Cco10g0387 Cco-Chr10:4528770 5.00E-73 dispersed
Cco10g0387 Cco-Chr10:4528770 Cco11g0470 Cco-Chr11:5016895 5.20E-69 dispersed
Cco10g0387 Cco-Chr10:4528770 Cco10g0443 Cco-Chr10:5212577 1.40E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60064 PF03106 WRKY 3.20E-24 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0387 K18835 - csv:101207853 1330.85