Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0388 ATGAAAATGGCCTCATCATTTCGAAATCAATCACAAGTCCATTGGCTTTTGAAGCCCAAGGGCGCCAGCGACGCTTACCGCTGTCGGGGCACAAGAACCAATGCTCTTGAACACCAGGGCTTCCGCTTTCAATTGGTGGAAGGCATGGCAGCTCCAGCAACAGCAGACGTTTGTGATGCAAATGCAGCACATGTCACAAACGGAGATCTCCGAGTACTGCAACCGGCATTTGAGATTTACGGGCAACGGCGAGCGTTTTCGGGACCGATAGTGACGGTCAAGGTATTTGAAGACAATGTTTTGGTGAGACAGCTTCTTGAAACCAAAGGTGAGGGGAGGGTTCTGGTGATAGATGGGAATGGAAGCAGAAGATGTGCATTGTTGGGAGGTAATCTTGGGCAGTTGGCTCAAAACAATGGGTGGGCTGGGATTGTTGTAAATGGTTGCATAAGAGATGTTGATGAGATCAATAATTGTGATATTGGTGTGAGAGCATTAGGGACTAATCCATTGAAGTCAAACAAGAAAGGGATGGGAGAAAAGCATGTGGTGGTTCAAATTGGTGGCACTCTGATTCATGAAGGGGAGTGGTTATATGCTGATAATGATGGCATTTTGGTGTCCAAATTTGAGTTGTCTGTTTGA 645 46.51 MKMASSFRNQSQVHWLLKPKGASDAYRCRGTRTNALEHQGFRFQLVEGMAAPATADVCDANAAHVTNGDLRVLQPAFEIYGQRRAFSGPIVTVKVFEDNVLVRQLLETKGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGTNPLKSNKKGMGEKHVVVQIGGTLIHEGEWLYADNDGILVSKFELSV 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4548974 4551372 - CcPI632755_10g003880.1 Cco10g0388 189346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0388 214 CDD RraA_family 55 208 IPR005493 -
Cco10g0388 214 Gene3D - 49 214 - -
Cco10g0388 214 PANTHER 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED 49 214 - -
Cco10g0388 214 Pfam Aldolase/RraA 54 207 IPR005493 -
Cco10g0388 214 NCBIfam RraA family 54 208 IPR010203 GO:0008428(InterPro)|GO:0051252(InterPro)
Cco10g0388 214 SUPERFAMILY RraA-like 53 212 IPR036704 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0388 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1062 Cco-Chr3:18602093 Cco10g0388 Cco-Chr10:4548974 3.00E-64 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g796 . . . . Bpe09g00094 . . Bma13g01147 . . . . . . . . . . . . . . . . Cla10g00363 Cam10g0375 Cec10g0394 Cco10g0388 Clacu10g0379 Cmu10g1216 Cre10g0630 . . . . . . . . . Blo10g00893 . Bda12g00993 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001787 2 3 2 2 2 2 3 2 2 2 3 2 3 2 1 3 2 1 2 2 2 4 2 2 2 2 1 5 3 2 68