Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0393 ATGGAGTTTTCTTATATTTCTCCATTGCTCTTGTTTTTCTTTTTGCTTCAAACATCTGCCATTCCTACCAAAAAGTCTTACATTGTTTATTTGGGATCGCACTCGTTTGGACCGAACCCTTCAAGATATGATGTCCAACGCGTAACTGAGTCCCAATATGATATATTAGGATCAGTCACGGGAAGCAAATTGGCAGCCAAAGAATCAATTATGTATTCCTACAATAGATACATTAATGGTTTTGCTGCCGTACTTGATGAAAAAGAAGCCATGGCTCTTGCGAAGAATCCAAACGTGGTGTCGGTTTTTGAGAACAAGGAAAGAAAATTACATACAACACGATCATGGAATTTTCTTGGGGTGGATAGTGACGCAGGAATTCCTCCAAACTCCATTTGGAAAGCTGCAAGGTTTGGAGAAGATACAATTATAGGCAACCTTGACACGGGTGCTTGGCCAGAGTCCAAGAGCTTCAATGATGCAGGCTATGGTCCTATTCCTTCAAGGTGGAAGGGAGCTTGTGAAGGTGGCGCCAACTTTCGTTGCAATAGGAAGTTGATTGGAGCAAGATATTTCTACCAAGGATTTGCAATGTCAAAAGGTCCTCTCAATGTTAGTTTTAATAGTGCAAGAGACCAAGAAGGCCATGGTTCACACACTTTGTCCACAGCCGGAGGCAACTTTGTCCCCGGAGCCAATATCTTTGGCTATGGCAATGGCACTGCAAAAGGAGGTTCCCCCAAAGCTCGTCTTGCTGCCTACAAGGTTTGCTGGCCTTCATCTAGTGGCGGCTGTTTCGATGCTGATATCCTTGCCGGTTTCGAAGCTGCCATTAGCGACGGTGTCGATGTTCTCTCGGTCTCTCTTGGTACCGCAGCTCAAGAGTTTGCTTATGACGCCGTTTCGATAGGGGCATTCCATGCCATTCAACAAGGAATTGTTGTGGTTTGCTCGGGTGGAAATGATGGCCCGGCTCCTGGAACTATAAGCAATGTTTCTCCTTGGATGTTCACTGTTGCAGCTAGTTCCATCGACCGAGACTTTGTCAGTTATGTCGCTCTCGGAAACAAGAAGCATATCAAGGGTTCAAGTCTTTCATCTAGTGGATTGCCGAGTGGTAAGTTCTACCCCTTGATAAATGGTGCGGAAGCAAAAGCTGCCAATGCCACTGATAATCTTGCACAACTTTGCTTGGAGGGATCACTTGATCCCACAAAAGCAAAAGGAAAGATTATAGTTTGCTTTCGAGGAGAAAATGGAAGAGTGGAGAAAGGTTTCGTTGTTCTTAAAGCTGGTGGCGCCGGTATGATTTTGGTGAATGACAAGCAACACGGATCAGGCACTTTGGCCGATCCCCATATAGTTCCTGCTGTTCATATAAGCTACACCGATGGTCTTTCTATCGCTCAATATATTAACTCCACCAAGGCACCCATTGCTCACATAACCCACGTAAGGACTAAGGTAGGAATTAAACCATCACCTGTCATGGCTGACTTCTCCTCAAGAGGCCCTAGTTCCATCACAGAAGCCACGCTCAAGCCTGATATAACAGCGCCAGGAGTTAGTATAATCGCATCGGTCACGACAGATGTAACTGCAACGGAATTGCCGTTTGATAAGCGTCGGGTGCCTTTCAGCGTTGAATCCGGCACTTCGATGTCTTGCCCACACATCTCAGGTGTTGTTGGCCTTTTGAAGACCCTTTATCCCACATGGAGTCCAGCAGCTATCAAATCTGCCATCATGACTACAGCAAAAACAAGAGACAACACCCAGCAAACAATATTGAACAGCAAAAAAGTGAAGGCAACCCCATTTGATTATGGTGCAGGACATGTCCATCCCAACAATGCAATGGACCCTGGCCTCGTTTATGACACGACCATTGAGGACTACTTGAACTTCTTATGTGCACGAGGCTACAACGCCCTAGCTCTCAAGAAGTTCTATAACAAACCATTTGTCTGCGCCAAATCATTCGCAATCACAGATCTTAACTACCCATCAATCTCAGTCCCAGAGTTGCGAACTGGAGCCCCGGTAACGGTCAATAGAAGAGTTAAGAATGTGGGAACCCCAGGAACGTACATAGCAAGGGTGAAGGTGTCCTCGAAGGTTTCAGTTTCGGTCGTGCCGAGTACGTTGCAGTTTAATAGTGTGGGTGAAGAGAAGGCTTTCAAGGTTGTATTTCAATACAAAGGACAAGGAAAAGGTGAAGGCCATGTGTTTGGGACATTAATATGGTCAGATGGGAAGCATTTTGTTAGAAGTCCTCTTGCAGTGAAACTGGGATGA 2298 45.56 MEFSYISPLLLFFFLLQTSAIPTKKSYIVYLGSHSFGPNPSRYDVQRVTESQYDILGSVTGSKLAAKESIMYSYNRYINGFAAVLDEKEAMALAKNPNVVSVFENKERKLHTTRSWNFLGVDSDAGIPPNSIWKAARFGEDTIIGNLDTGAWPESKSFNDAGYGPIPSRWKGACEGGANFRCNRKLIGARYFYQGFAMSKGPLNVSFNSARDQEGHGSHTLSTAGGNFVPGANIFGYGNGTAKGGSPKARLAAYKVCWPSSSGGCFDADILAGFEAAISDGVDVLSVSLGTAAQEFAYDAVSIGAFHAIQQGIVVVCSGGNDGPAPGTISNVSPWMFTVAASSIDRDFVSYVALGNKKHIKGSSLSSSGLPSGKFYPLINGAEAKAANATDNLAQLCLEGSLDPTKAKGKIIVCFRGENGRVEKGFVVLKAGGAGMILVNDKQHGSGTLADPHIVPAVHISYTDGLSIAQYINSTKAPIAHITHVRTKVGIKPSPVMADFSSRGPSSITEATLKPDITAPGVSIIASVTTDVTATELPFDKRRVPFSVESGTSMSCPHISGVVGLLKTLYPTWSPAAIKSAIMTTAKTRDNTQQTILNSKKVKATPFDYGAGHVHPNNAMDPGLVYDTTIEDYLNFLCARGYNALALKKFYNKPFVCAKSFAITDLNYPSISVPELRTGAPVTVNRRVKNVGTPGTYIARVKVSSKVSVSVVPSTLQFNSVGEEKAFKVVFQYKGQGKGEGHVFGTLIWSDGKHFVRSPLAVKLG 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4601647 4609195 + CcPI632755_10g003930.1 Cco10g0393 189351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0393 765 ProSitePatterns Serine proteases, subtilase family, serine active site. 551 561 IPR023828 -
Cco10g0393 765 CDD Peptidases_S8_3 109 586 IPR034197 -
Cco10g0393 765 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Cco10g0393 765 PRINTS Subtilisin serine protease family (S8) signature 212 225 IPR015500 -
Cco10g0393 765 PRINTS Subtilisin serine protease family (S8) signature 550 566 IPR015500 -
Cco10g0393 765 Pfam Peptidase inhibitor I9 26 111 IPR010259 -
Cco10g0393 765 Gene3D - 637 764 - -
Cco10g0393 765 Pfam PA domain 376 468 IPR003137 -
Cco10g0393 765 SUPERFAMILY Subtilisin-like 110 624 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0393 765 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 760 IPR045051 -
Cco10g0393 765 Gene3D Peptidase S8/S53 domain 141 633 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0393 765 ProSiteProfiles Serine proteases, subtilase domain profile. 115 620 - -
Cco10g0393 765 CDD PA_subtilisin_like 351 482 - -
Cco10g0393 765 Gene3D - 345 489 - -
Cco10g0393 765 FunFam Subtilisin-like protease SBT5.3 16 111 - -
Cco10g0393 765 SUPERFAMILY Protease propeptides/inhibitors 25 108 - -
Cco10g0393 765 FunFam Subtilisin-like protease SBT1.5 637 765 - -
Cco10g0393 765 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 111 IPR037045 -
Cco10g0393 765 FunFam Subtilisin-like protease SBT1.5 141 358 - -
Cco10g0393 765 Pfam Subtilase family 141 598 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco10g0393 765 FunFam subtilisin-like protease SBT1.5 345 489 - -
Cco10g0393 765 SUPERFAMILY PA domain 404 475 IPR046450 -
Cco10g0393 765 Coils Coil 379 399 - -
Cco10g0393 765 Pfam Fibronectin type-III domain 665 762 IPR041469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0322 Cco-Chr2:2939845 Cco10g0393 Cco-Chr10:4601647 3.50E-248 dispersed
Cco04g2195 Cco-Chr4:35587914 Cco10g0393 Cco-Chr10:4601647 3.60E-166 dispersed
Cco07g0867 Cco-Chr7:20116718 Cco10g0393 Cco-Chr10:4601647 2.90E-134 dispersed
Cco08g1223 Cco-Chr8:23940209 Cco10g0393 Cco-Chr10:4601647 6.00E-132 dispersed
Cco09g0134 Cco-Chr9:1183102 Cco10g0393 Cco-Chr10:4601647 1.00E-152 dispersed
Cco10g0393 Cco-Chr10:4601647 Cco10g0395 Cco-Chr10:4632477 2.90E-306 dispersed
Cco10g0393 Cco-Chr10:4601647 Cco10g0394 Cco-Chr10:4613315 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0393 - - - 0.0