Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0394 ATGGAGTTCTCTTATATTTCTATATTGCTTTTGTTTTGCTTTTTGCTTCAAACATCTGCCCTTCCTACCAAAAAGTCCTACATTGTTTATTTGGGGTCGCACTCTTTTGGACCAAATCCTTCTATATTTGATGTCCAACTTGCAACCGAGTCCCAATATGATATATTAGGATCCACCCTGGGAAGCAAAGTGGCAGCCAAAGAATCAATTATCTACTCATATAATAAATACATCAATGGCTTTGCTGCCGTACTTGATGAAAAGGAAGCCATGGCTCTTGCAAACAACCCGAGTGTGGTGTCGGTTTTTGAAAACCAGAAAAGACAATTGCATACAACTAGATCATGGAGTTTTCTTGGGGTAGACAGTGATGCAGGAGTTCCCCCAAACTCCATTTGGGAAGCTGCAAGGTTTGGGGAAGATACAATCATAGGGAATCTCGATACGGGTGTTTGGCCAGAGTCCAAGAGCTTTAGTGATGAAGGCTATGGCCCTGTTCCTTCAAGGTGGAATGGAGTTTGTGAGGGTGGCTTCAACTTTACTTGCAACAAGAAGTTGATTGGAGCAAGATATTTCTACAAAGGATTTGAAGCTGCAAATGGTGCTATGAGTGATAGCACCTTAAAAACTGCAAGAGACCAAGAAGGCCATGGATCCCATACATTGTCCACTGCCGGAGGCAACTTTGTCCCCGGAGCCAATGTCTTTGGCAATGCCAATGGCACTGCAAAAGGAGGTTCCCCTAAAGCTCGTGTTGCTGCCTACAAGGTATGCTGGCCTGGTGTCCAAGACGGCGGCTGTTTTGATGCCGACATCCTAGCCGCTATCGAAGCTGCCATTAGCGATGGTGTCGATGTTCTCTCTTTCTCTCTCGGCGCACCAGCTCGAGATTTTGCTAGTGACCCCCTTTCGATAGGAACCTTCCGTGCCGTTCAACGAGGAATCGTCGTGGTTTGCTCCGGAGGAAATGACGGCCCGTCTCCTGGGACTATAACCAATGTATCTCCTTGGATGTTCACGGTTGCTGCTAGTACCATCGACCGAGATTTCTTCAGTTATGTGACCCTCGGAAACAAGCAGCATTACAAGGGTGCAAGTCTTTCATCCGGAGGATTACCGGGTGGTAAATTCTACCCTTTGATGGATGGTGTGCAAGTAAAGGCTGCCAATGCCACTGATAATCTTGCCCTACATTGTGAGGATGGATCACTTGATCCCACAAAGGCAAAAGGGAAGATAATACTTTGCCTTAGAGGAGACGGTGCAAGAATGGGTAAGGGTTTCGAGGTTCGTCGTGCCGGTGGCGTCGGTATGATTCTTGTGAATGACAAAGAAAATGGAAATGAAATTACAGCCGATCATCACCTCCTTCCTGCTTCTCATTTGAACTATGCCGATGGACTTGCCGTCTTTCAATATCTCAACTCCACCCAATCACCGGTGGCTTTCATAACCCATGTAAAGACTGAGTTAGGAATCAAACCATCCCCCATGATGGGTGATTTCTCATCAAGAGGCCCTAATCCCATCGTAGACTCAATGATCAAGCCTGATATTACAGCACCGGGTGTGAATATACTCGCAGCAGTCTCTGAATTTGCTAAGGCAACAAATTTTCCATTTGAAACGCGTCAGGTGCCTTTTAACCTTGAAATTGGTACTTCTATGTCTTGTCCACACATCTCAGGTATTGCTGGCCTTCTCAAGACACTTTATCCCAAATGGAGCCCAGCAGCCATCAAATCTGCTATCATGACTACAGCCAAAACAAGAGACAACTCCAATAAGTCAATATTGGACTACAACAAAGGCTACAACTACACCATACTCAAGAAATTCTATAACAAGCCATTCGTTTGCGCCAAATCGTTTGCTATCACAGATCTCAACTACCCATCAATCTTAGTTCCGAAGTTGACCGTTGGTACCACCGTGACGATCAATAGAAGAGTTAAGAATGTGGGAACCCCAGGAACGTATGTGGCACGCGTGAAGATGTCCTCAAAGGTCTCAGTTTCAGTCGAGCCGAGTACGTTGCAATTTAATAGTGTGGATGAAGAGAAGGCTTTCAAGATTGTATTTCAATACAAAGGACAAGGAAAAGCTCAAAGTCATGTGTTTGGCACATTGATATGGTCAGATGGGAAGCATTTTGTTAGAAGTCCCATTGCAGTGGCATTGGGATGA 2187 45.27 MEFSYISILLLFCFLLQTSALPTKKSYIVYLGSHSFGPNPSIFDVQLATESQYDILGSTLGSKVAAKESIIYSYNKYINGFAAVLDEKEAMALANNPSVVSVFENQKRQLHTTRSWSFLGVDSDAGVPPNSIWEAARFGEDTIIGNLDTGVWPESKSFSDEGYGPVPSRWNGVCEGGFNFTCNKKLIGARYFYKGFEAANGAMSDSTLKTARDQEGHGSHTLSTAGGNFVPGANVFGNANGTAKGGSPKARVAAYKVCWPGVQDGGCFDADILAAIEAAISDGVDVLSFSLGAPARDFASDPLSIGTFRAVQRGIVVVCSGGNDGPSPGTITNVSPWMFTVAASTIDRDFFSYVTLGNKQHYKGASLSSGGLPGGKFYPLMDGVQVKAANATDNLALHCEDGSLDPTKAKGKIILCLRGDGARMGKGFEVRRAGGVGMILVNDKENGNEITADHHLLPASHLNYADGLAVFQYLNSTQSPVAFITHVKTELGIKPSPMMGDFSSRGPNPIVDSMIKPDITAPGVNILAAVSEFAKATNFPFETRQVPFNLEIGTSMSCPHISGIAGLLKTLYPKWSPAAIKSAIMTTAKTRDNSNKSILDYNKGYNYTILKKFYNKPFVCAKSFAITDLNYPSILVPKLTVGTTVTINRRVKNVGTPGTYVARVKMSSKVSVSVEPSTLQFNSVDEEKAFKIVFQYKGQGKAQSHVFGTLIWSDGKHFVRSPIAVALG 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4613315 4622631 + CcPI632755_10g003940.1 Cco10g0394 189352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0394 728 Gene3D Peptidase S8/S53 domain 141 597 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0394 728 CDD PA_subtilisin_like 353 484 - -
Cco10g0394 728 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 111 IPR037045 -
Cco10g0394 728 PRINTS Subtilisin serine protease family (S8) signature 213 226 IPR015500 -
Cco10g0394 728 PRINTS Subtilisin serine protease family (S8) signature 552 568 IPR015500 -
Cco10g0394 728 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Cco10g0394 728 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 723 IPR045051 -
Cco10g0394 728 FunFam subtilisin-like protease SBT1.5 347 491 - -
Cco10g0394 728 Pfam Peptidase inhibitor I9 26 111 IPR010259 -
Cco10g0394 728 CDD Peptidases_S8_3 109 588 IPR034197 -
Cco10g0394 728 Pfam Subtilase family 139 599 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco10g0394 728 Gene3D - 606 727 - -
Cco10g0394 728 SUPERFAMILY Subtilisin-like 110 608 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0394 728 Pfam Fibronectin type-III domain 628 725 IPR041469 -
Cco10g0394 728 FunFam Subtilisin-like protease SBT5.3 16 111 - -
Cco10g0394 728 ProSitePatterns Serine proteases, subtilase family, serine active site. 553 563 IPR023828 -
Cco10g0394 728 Gene3D - 347 491 - -
Cco10g0394 728 ProSiteProfiles Serine proteases, subtilase domain profile. 115 614 - -
Cco10g0394 728 FunFam Subtilisin-like protease SBT1.5 141 357 - -
Cco10g0394 728 SUPERFAMILY Protease propeptides/inhibitors 25 109 - -
Cco10g0394 728 Pfam PA domain 395 469 IPR003137 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0394 Cco-Chr10:4613315 Cco10g0396 Cco-Chr10:4645176 6.40E-194 dispersed
Cco10g0393 Cco-Chr10:4601647 Cco10g0394 Cco-Chr10:4613315 0.00E+00 tandem
Cco10g0394 Cco-Chr10:4613315 Cco10g0395 Cco-Chr10:4632477 2.10E-269 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0394 - - - 0.0