Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0395 ATGGATGTAATACGAATATATTTAGAGGATCCAAGTGTGGTGTCGGTTTTTGAAAATGAGGAAAGAGATTTGCATACAACAAGATCATGGAATTTTCTTGGAGTGGAGAGTGATGAAGAAATAATTCCTCCAAACTCCATTTGGAAAGCTGCAAGGTTTGGGGAAGATACAATTATAGGCAACCTTGACACAGGTGTTTGGCCAGAGTCCAAGAGCTTCAATGATGCAGGCTATGGCCCTGTTCCTTCAAGGTGGAGAGGAGCTTGTGAAGGTGGACCCAACTTCAGTTGTAATAGGAAATTGATTGGAGCACGATATTTCTATCAAGGAGTTGTAAGTGCAAAGGGGCTTCTCAACAATACCTTCAACACTGCACGAGACCGTGGAGGCCATGGATCCCACACTCTGTCCACGGCCGGCGGCAACTTTGTCCCCGGAGCCAATATCTTTGGCTATGGCAATGGCACTGCAAAAGGAGGTTCCCCCAAAGCTCGTGTTGCTGCCTACAAGGTTTGCTGGCCTGCCCCTAATGGTGGCTGTTTCGATGCTGATATACTAGCCGCTTTTGAAGCTGCCATTAGCGACGGTGTCGATGTTCTCTCCGTCTCTCTTGGTGGAAGAGCTCAAGAGTTTTCTCGTGACCCCATTTCGATAGGGGCCTTCCATGCTGTCCAACAAGGAATTGTTGTGGTTTGCTCGGGAGGAAATAAAGGTCCGACTCCTCAGACTGTAAGCAATATTTCCCCCTGGAAATTCACTGTCGCAGCTAGTTACTCCGACCGAAGCTTCGCCAATTATGTAGTCCTCGAAAACAAGAAGCATTTTAAGGGTCCAAGTCTTTCATCTGGAGAATTGCCAGAGGGTAAGTTCTACCCTTTGATGAATGCTGTTGAAGCAAAAGCTGCAAATGCCTCTGATAACCTTGCCCAAATTTGCGAGTACGGATCACTTGATCCTACAAAGGCAAAAGGGAAGATTATAGTTTGTCATCTAGGAGACAATTCAAGAATTGATAAGGGTTTCGAGGTTGTTCGTGTTGGTGGTGTTGGTATGATTATTGTAAATGACAAGAAAGATGGAAGTAACGTTAATATCGATCTCCACATACTTCCTGCTTCTCATTTAAACTATGAAGATGGACTTTCAATTGCTCAATATATGAATTCCACCAAAACACCCATGGCTTTCATAACACATGTAAAAACTGAGTTGGGAATTAAACCATCACCTGTCATGGCTGGATTCTCATCAAAAGGCCCTAATCCCATCACAGACTCCATGATCAAGCCTGATATAACAGCACCGGGAGCGAGTATAATCGCATCGTTCACAGAAGATGTAATGGCAACAAAATCTCGATTCGATACCCGTCGAGTGCCTTTTAATGTTCAATCTGGAACTTCTATGGCTTGCCCACACATCTCGGGTGTTGTTGGCCTTCTCAAGACCCTTTACCCTACATGGAGTCCTGCAGCTATCAAATCTGCTATCATGACTACAGCAAATACAAGAGACAACACCATGCATCCAATATTGGACTCTGACAACTTAGAGGGAACCCCATTTGATTATGGTGCAGGACATGTTAATCCTAACAATGCAATAGACCCCGGTCTTGTTTACGATACGACCATTGATGACTACTTGAACTTCTTATGTGCTTGGGGCTACAACTACACCCAACTCAAGAAATTCTCTAACAAGCCATTTGTTTGCGCCGAATCATTCGCAATCACAGATCTCAACTACCCATCGATCTCAGTTCCGAAGTTGACAATCGATGCCCCAGTGACGATCAATAGAAGAGTTAAAAATGTGGGAAGTCCAGGATCGTATGTGGCGCAAGTGAAGGTGCCTGAGGGAGTTGCGGCTACCGTCGAGCCGAATATGTTGCAATTTAACAATGTGGGTGAAGAGAAGGCTTTCAAGGTTGTATTTCGATACATAGGACAAGGACAACGTCAAGGCTATGTTTTTGGGACGTTAGTATGGTCAGATGGGAAGCATTTTGTTAGAAGTCCTATTGCAATGAAATTGGGATGA 2043 44.49 MDVIRIYLEDPSVVSVFENEERDLHTTRSWNFLGVESDEEIIPPNSIWKAARFGEDTIIGNLDTGVWPESKSFNDAGYGPVPSRWRGACEGGPNFSCNRKLIGARYFYQGVVSAKGLLNNTFNTARDRGGHGSHTLSTAGGNFVPGANIFGYGNGTAKGGSPKARVAAYKVCWPAPNGGCFDADILAAFEAAISDGVDVLSVSLGGRAQEFSRDPISIGAFHAVQQGIVVVCSGGNKGPTPQTVSNISPWKFTVAASYSDRSFANYVVLENKKHFKGPSLSSGELPEGKFYPLMNAVEAKAANASDNLAQICEYGSLDPTKAKGKIIVCHLGDNSRIDKGFEVVRVGGVGMIIVNDKKDGSNVNIDLHILPASHLNYEDGLSIAQYMNSTKTPMAFITHVKTELGIKPSPVMAGFSSKGPNPITDSMIKPDITAPGASIIASFTEDVMATKSRFDTRRVPFNVQSGTSMACPHISGVVGLLKTLYPTWSPAAIKSAIMTTANTRDNTMHPILDSDNLEGTPFDYGAGHVNPNNAIDPGLVYDTTIDDYLNFLCAWGYNYTQLKKFSNKPFVCAESFAITDLNYPSISVPKLTIDAPVTINRRVKNVGSPGSYVAQVKVPEGVAATVEPNMLQFNNVGEEKAFKVVFRYIGQGQRQGYVFGTLVWSDGKHFVRSPIAMKLG 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4632477 4639221 + CcPI632755_10g003950.1 Cco10g0395 189353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0395 680 ProSitePatterns Serine proteases, subtilase family, serine active site. 466 476 IPR023828 -
Cco10g0395 680 ProSiteProfiles Serine proteases, subtilase domain profile. 29 535 - -
Cco10g0395 680 Pfam Subtilase family 54 510 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco10g0395 680 FunFam subtilisin-like protease SBT1.5 260 404 - -
Cco10g0395 680 FunFam Subtilisin-like protease SBT1.5 56 285 - -
Cco10g0395 680 Pfam PA domain 304 383 IPR003137 -
Cco10g0395 680 SUPERFAMILY PA domain 307 401 IPR046450 -
Cco10g0395 680 CDD Peptidases_S8_3 24 502 IPR034197 -
Cco10g0395 680 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 12 675 IPR045051 -
Cco10g0395 680 Gene3D Peptidase S8/S53 domain 56 548 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0395 680 Gene3D - 260 404 - -
Cco10g0395 680 CDD PA_subtilisin_like 266 397 - -
Cco10g0395 680 SUPERFAMILY Subtilisin-like 24 539 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0395 680 Gene3D - 552 679 - -
Cco10g0395 680 PRINTS Subtilisin serine protease family (S8) signature 54 73 IPR015500 -
Cco10g0395 680 PRINTS Subtilisin serine protease family (S8) signature 465 481 IPR015500 -
Cco10g0395 680 PRINTS Subtilisin serine protease family (S8) signature 127 140 IPR015500 -
Cco10g0395 680 Pfam Fibronectin type-III domain 580 676 IPR041469 -
Cco10g0395 680 FunFam Subtilisin-like protease SBT1.5 552 680 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0393 Cco-Chr10:4601647 Cco10g0395 Cco-Chr10:4632477 2.90E-306 dispersed
Cco10g0395 Cco-Chr10:4632477 Cco10g0400 Cco-Chr10:4718153 1.50E-173 dispersed
Cco10g0394 Cco-Chr10:4613315 Cco10g0395 Cco-Chr10:4632477 2.10E-269 tandem
Cco10g0395 Cco-Chr10:4632477 Cco10g0396 Cco-Chr10:4645176 1.80E-158 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0395 - - - 0.0