Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0395 ATGGATGTAATACGAATATATTTAGAGGATCCAAGTGTGGTGTCGGTTTTTGAAAATGAGGAAAGAGATTTGCATACAACAAGATCATGGAATTTTCTTGGAGTGGAGAGTGATGAAGAAATAATTCCTCCAAACTCCATTTGGAAAGCTGCAAGGTTTGGGGAAGATACAATTATAGGCAACCTTGACACAGGTGTTTGGCCAGAGTCCAAGAGCTTCAATGATGCAGGCTATGGCCCTGTTCCTTCAAGGTGGAGAGGAGCTTGTGAAGGTGGACCCAACTTCAGTTGTAATAGGAAATTGATTGGAGCACGATATTTCTATCAAGGAGTTGTAAGTGCAAAGGGGCTTCTCAACAATACCTTCAACACTGCACGAGACCGTGGAGGCCATGGATCCCACACTCTGTCCACGGCCGGCGGCAACTTTGTCCCCGGAGCCAATATCTTTGGCTATGGCAATGGCACTGCAAAAGGAGGTTCCCCCAAAGCTCGTGTTGCTGCCTACAAGGTTTGCTGGCCTGCCCCTAATGGTGGCTGTTTCGATGCTGATATACTAGCCGCTTTTGAAGCTGCCATTAGCGACGGTGTCGATGTTCTCTCCGTCTCTCTTGGTGGAAGAGCTCAAGAGTTTTCTCGTGACCCCATTTCGATAGGGGCCTTCCATGCTGTCCAACAAGGAATTGTTGTGGTTTGCTCGGGAGGAAATAAAGGTCCGACTCCTCAGACTGTAAGCAATATTTCCCCCTGGAAATTCACTGTCGCAGCTAGTTACTCCGACCGAAGCTTCGCCAATTATGTAGTCCTCGAAAACAAGAAGCATTTTAAGGGTCCAAGTCTTTCATCTGGAGAATTGCCAGAGGGTAAGTTCTACCCTTTGATGAATGCTGTTGAAGCAAAAGCTGCAAATGCCTCTGATAACCTTGCCCAAATTTGCGAGTACGGATCACTTGATCCTACAAAGGCAAAAGGGAAGATTATAGTTTGTCATCTAGGAGACAATTCAAGAATTGATAAGGGTTTCGAGGTTGTTCGTGTTGGTGGTGTTGGTATGATTATTGTAAATGACAAGAAAGATGGAAGTAACGTTAATATCGATCTCCACATACTTCCTGCTTCTCATTTAAACTATGAAGATGGACTTTCAATTGCTCAATATATGAATTCCACCAAAACACCCATGGCTTTCATAACACATGTAAAAACTGAGTTGGGAATTAAACCATCACCTGTCATGGCTGGATTCTCATCAAAAGGCCCTAATCCCATCACAGACTCCATGATCAAGCCTGATATAACAGCACCGGGAGCGAGTATAATCGCATCGTTCACAGAAGATGTAATGGCAACAAAATCTCGATTCGATACCCGTCGAGTGCCTTTTAATGTTCAATCTGGAACTTCTATGGCTTGCCCACACATCTCGGGTGTTGTTGGCCTTCTCAAGACCCTTTACCCTACATGGAGTCCTGCAGCTATCAAATCTGCTATCATGACTACAGCAAATACAAGAGACAACACCATGCATCCAATATTGGACTCTGACAACTTAGAGGGAACCCCATTTGATTATGGTGCAGGACATGTTAATCCTAACAATGCAATAGACCCCGGTCTTGTTTACGATACGACCATTGATGACTACTTGAACTTCTTATGTGCTTGGGGCTACAACTACACCCAACTCAAGAAATTCTCTAACAAGCCATTTGTTTGCGCCGAATCATTCGCAATCACAGATCTCAACTACCCATCGATCTCAGTTCCGAAGTTGACAATCGATGCCCCAGTGACGATCAATAGAAGAGTTAAAAATGTGGGAAGTCCAGGATCGTATGTGGCGCAAGTGAAGGTGCCTGAGGGAGTTGCGGCTACCGTCGAGCCGAATATGTTGCAATTTAACAATGTGGGTGAAGAGAAGGCTTTCAAGGTTGTATTTCGATACATAGGACAAGGACAACGTCAAGGCTATGTTTTTGGGACGTTAGTATGGTCAGATGGGAAGCATTTTGTTAGAAGTCCTATTGCAATGAAATTGGGATGA 2043 44.49 MDVIRIYLEDPSVVSVFENEERDLHTTRSWNFLGVESDEEIIPPNSIWKAARFGEDTIIGNLDTGVWPESKSFNDAGYGPVPSRWRGACEGGPNFSCNRKLIGARYFYQGVVSAKGLLNNTFNTARDRGGHGSHTLSTAGGNFVPGANIFGYGNGTAKGGSPKARVAAYKVCWPAPNGGCFDADILAAFEAAISDGVDVLSVSLGGRAQEFSRDPISIGAFHAVQQGIVVVCSGGNKGPTPQTVSNISPWKFTVAASYSDRSFANYVVLENKKHFKGPSLSSGELPEGKFYPLMNAVEAKAANASDNLAQICEYGSLDPTKAKGKIIVCHLGDNSRIDKGFEVVRVGGVGMIIVNDKKDGSNVNIDLHILPASHLNYEDGLSIAQYMNSTKTPMAFITHVKTELGIKPSPVMAGFSSKGPNPITDSMIKPDITAPGASIIASFTEDVMATKSRFDTRRVPFNVQSGTSMACPHISGVVGLLKTLYPTWSPAAIKSAIMTTANTRDNTMHPILDSDNLEGTPFDYGAGHVNPNNAIDPGLVYDTTIDDYLNFLCAWGYNYTQLKKFSNKPFVCAESFAITDLNYPSISVPKLTIDAPVTINRRVKNVGSPGSYVAQVKVPEGVAATVEPNMLQFNNVGEEKAFKVVFRYIGQGQRQGYVFGTLVWSDGKHFVRSPIAMKLG 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4632477 4639221 + CcPI632755_10g003950.1 Cco10g0395 189353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0395 680 ProSitePatterns Serine proteases, subtilase family, serine active site. 466 476 IPR023828 -
Cco10g0395 680 ProSiteProfiles Serine proteases, subtilase domain profile. 29 535 - -
Cco10g0395 680 Pfam Subtilase family 54 510 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco10g0395 680 FunFam subtilisin-like protease SBT1.5 260 404 - -
Cco10g0395 680 FunFam Subtilisin-like protease SBT1.5 56 285 - -
Cco10g0395 680 Pfam PA domain 304 383 IPR003137 -
Cco10g0395 680 SUPERFAMILY PA domain 307 401 IPR046450 -
Cco10g0395 680 CDD Peptidases_S8_3 24 502 IPR034197 -
Cco10g0395 680 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 12 675 IPR045051 -
Cco10g0395 680 Gene3D Peptidase S8/S53 domain 56 548 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0395 680 Gene3D - 260 404 - -
Cco10g0395 680 CDD PA_subtilisin_like 266 397 - -
Cco10g0395 680 SUPERFAMILY Subtilisin-like 24 539 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0395 680 Gene3D - 552 679 - -
Cco10g0395 680 PRINTS Subtilisin serine protease family (S8) signature 54 73 IPR015500 -
Cco10g0395 680 PRINTS Subtilisin serine protease family (S8) signature 465 481 IPR015500 -
Cco10g0395 680 PRINTS Subtilisin serine protease family (S8) signature 127 140 IPR015500 -
Cco10g0395 680 Pfam Fibronectin type-III domain 580 676 IPR041469 -
Cco10g0395 680 FunFam Subtilisin-like protease SBT1.5 552 680 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0395 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0393 Cco-Chr10:4601647 Cco10g0395 Cco-Chr10:4632477 2.90E-306 dispersed
Cco10g0395 Cco-Chr10:4632477 Cco10g0400 Cco-Chr10:4718153 1.50E-173 dispersed
Cco10g0394 Cco-Chr10:4613315 Cco10g0395 Cco-Chr10:4632477 2.10E-269 tandem
Cco10g0395 Cco-Chr10:4632477 Cco10g0396 Cco-Chr10:4645176 1.80E-158 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco07g0708 . 39 788 Subtilisin-like Serine Gene Family AT1G01900 56.1 4.5e-230 794.7
Cco07g0706 . 37 797 Subtilisin-like Serine Gene Family AT1G01900 54.4 2.9e-229 792.0
Cco07g0138 . 12 769 Subtilisin-like Serine Gene Family AT1G04110 67.1 3.6e-312 1067.4
Cco05g1784 . 3 762 Subtilisin-like Serine Gene Family AT1G20150 53.2 3.4e-225 778.5
Cco05g1784 . 6 505 Subtilisin-like Serine Gene Family AT1G20160 61.3 6.4e-170 594.3
Cco08g1223 . 207 664 Subtilisin-like Serine Gene Family AT1G20160 50.3 3.6e-120 429.1
Cco04g2337 . 9 837 Subtilisin-like Serine Gene Family AT1G30600 65.3 5.9e-313 1070.1
Cco07g0867 . 91 810 Subtilisin-like Serine Gene Family AT1G32940 54.8 1.0e-228 790.0
Cco07g0867 . 91 810 Subtilisin-like Serine Gene Family AT1G32950 54.2 1.0e-223 773.5
Cco07g0867 . 38 810 Subtilisin-like Serine Gene Family AT1G32960 53.1 8.3e-232 800.4
Cco01g1038 . 14 763 Subtilisin-like Serine Gene Family AT1G62340 58.6 4.2e-250 861.3
Cco02g0322 . 2 736 Subtilisin-like Serine Gene Family AT2G04160 63.1 7.6e-278 953.4
Cco10g0393 . 26 764 Subtilisin-like Serine Gene Family AT2G04160 58.3 1.5e-249 859.4
Cco01g1247 . 21 769 Subtilisin-like Serine Gene Family AT2G04160 53.8 7.0e-231 797.3
Cco10g0395 . 11 679 Subtilisin-like Serine Gene Family AT2G04160 57.8 3.2e-228 788.5
Cco10g0394 . 26 727 Subtilisin-like Serine Gene Family AT2G04160 50.8 5.7e-209 724.5
Cco10g0396 . 584 1081 Subtilisin-like Serine Gene Family AT2G04160 57.8 5.6e-172 601.7
Cco03g1557 . 26 765 Subtilisin-like Serine Gene Family AT2G05920 73.5 0.0e+00 1099.3
Cco04g1491 . 22 761 Subtilisin-like Serine Gene Family AT2G05920 55.7 3.6e-232 801.6
Cco08g1821 . 38 773 Subtilisin-like Serine Gene Family AT2G05920 55.9 4.4e-222 768.1
Cco05g0916 . 27 772 Subtilisin-like Serine Gene Family AT2G05920 52.2 2.1e-216 749.2
Cco09g0103 . 30 760 Subtilisin-like Serine Gene Family AT2G05920 53.7 4.0e-215 745.0
Cco02g1285 . 31 764 Subtilisin-like Serine Gene Family AT2G05920 51.5 2.4e-207 719.2
Cco09g0134 . 28 781 Subtilisin-like Serine Gene Family AT2G05920 51.3 5.1e-202 701.4
Cco11g1214 . 30 831 Subtilisin-like Serine Gene Family AT2G19170 81.8 0.0e+00 1338.6
Cco09g0103 . 8 767 Subtilisin-like Serine Gene Family AT3G14067 64.0 3.5e-283 971.1
Cco04g1491 . 9 761 Subtilisin-like Serine Gene Family AT3G14067 54.1 9.8e-225 776.9
Cco03g1557 . 25 763 Subtilisin-like Serine Gene Family AT3G14067 54.1 1.5e-220 763.1
Cco08g1821 . 9 773 Subtilisin-like Serine Gene Family AT3G14067 51.0 1.8e-210 729.6
Cco09g0134 . 31 789 Subtilisin-like Serine Gene Family AT3G14240 77.3 0.0e+00 1209.5
Cco02g1285 . 32 772 Subtilisin-like Serine Gene Family AT3G14240 58.8 7.7e-246 847.0
Cco04g1491 . 27 757 Subtilisin-like Serine Gene Family AT3G14240 52.6 3.4e-217 751.9
Cco09g0103 . 29 758 Subtilisin-like Serine Gene Family AT3G14240 51.7 5.0e-213 738.0
Cco05g0916 . 28 768 Subtilisin-like Serine Gene Family AT3G14240 50.1 1.1e-210 730.3
Cco03g1557 . 29 759 Subtilisin-like Serine Gene Family AT3G14240 51.3 2.3e-210 729.2
Cco08g1821 . 40 772 Subtilisin-like Serine Gene Family AT3G14240 50.8 8.1e-203 704.1
Cco07g0711 . 12 570 Subtilisin-like Serine Gene Family AT4G00230 60.8 8.7e-197 683.7
Cco07g0709 . 9 568 Subtilisin-like Serine Gene Family AT4G00230 57.7 5.8e-185 644.4
Cco04g1202 . 1 540 Subtilisin-like Serine Gene Family AT4G00230 50.7 1.5e-143 506.9
Cco07g0867 . 91 808 Subtilisin-like Serine Gene Family AT4G10510 53.3 3.8e-223 771.5
Cco07g0867 . 68 808 Subtilisin-like Serine Gene Family AT4G10520 54.7 5.8e-230 794.3
Cco07g0867 . 68 808 Subtilisin-like Serine Gene Family AT4G10530 52.4 2.5e-217 752.3
Cco07g0867 . 67 810 Subtilisin-like Serine Gene Family AT4G10540 54.5 9.4e-236 813.5
Cco07g0867 . 91 810 Subtilisin-like Serine Gene Family AT4G10550 53.5 5.0e-223 771.2
Cco04g2337 . 9 837 Subtilisin-like Serine Gene Family AT4G20430 68.1 0.0e+00 1137.1
Cco03g0517 . 39 311 Subtilisin-like Serine Gene Family AT4G21320 78.8 2.0e-127 452.2
Cco07g0867 . 63 807 Subtilisin-like Serine Gene Family AT4G21650 50.1 8.5e-205 710.7
Cco01g1380 . 61 789 Subtilisin-like Serine Gene Family AT4G26330 55.8 8.1e-237 817.0
Cco11g1214 . 25 831 Subtilisin-like Serine Gene Family AT4G30020 81.5 0.0e+00 1334.3
Cco02g1285 . 25 772 Subtilisin-like Serine Gene Family AT4G34980 74.9 0.0e+00 1150.2
Cco09g0134 . 16 789 Subtilisin-like Serine Gene Family AT4G34980 53.2 3.8e-229 791.6
Cco04g1491 . 1 757 Subtilisin-like Serine Gene Family AT4G34980 51.5 1.6e-211 733.0
Cco05g0916 . 9 771 Subtilisin-like Serine Gene Family AT4G34980 50.6 8.8e-210 727.2
Cco03g1557 . 25 759 Subtilisin-like Serine Gene Family AT4G34980 50.8 1.8e-207 719.5
Cco04g1202 . 14 527 Subtilisin-like Serine Gene Family AT5G03620 60.6 1.0e-178 623.6
Cco10g1903 . 927 1439 Subtilisin-like Serine Gene Family AT5G03620 55.5 3.0e-162 568.9
Cco07g0711 . 8 568 Subtilisin-like Serine Gene Family AT5G03620 50.6 1.5e-145 513.5
Cco07g0709 . 5 566 Subtilisin-like Serine Gene Family AT5G03620 50.8 2.8e-144 509.2
Cco07g0369 . 5 533 Subtilisin-like Serine Gene Family AT5G03620 51.9 6.3e-144 508.1
Cco06g0956 . 291 1050 Subtilisin-like Serine Gene Family AT5G19660 80.0 0.0e+00 1272.3
Cco04g2337 . 33 611 Subtilisin-like Serine Gene Family AT5G44530 70.8 9.9e-244 839.7
Cco04g2195 . 77 779 Subtilisin-like Serine Gene Family AT5G45640 52.6 4.8e-200 694.9
Cco04g2195 . 23 779 Subtilisin-like Serine Gene Family AT5G45650 58.0 2.0e-249 859.0
Cco05g0916 . 27 770 Subtilisin-like Serine Gene Family AT5G51750 73.8 0.0e+00 1156.0
Cco04g1491 . 13 761 Subtilisin-like Serine Gene Family AT5G51750 52.2 2.7e-230 795.4
Cco08g1821 . 16 773 Subtilisin-like Serine Gene Family AT5G51750 52.5 6.8e-226 780.8
Cco03g1557 . 24 763 Subtilisin-like Serine Gene Family AT5G51750 51.3 7.3e-220 760.8
Cco05g2449 . 37 734 Subtilisin-like Serine Gene Family AT5G59190 50.5 9.1e-190 660.6
Cco01g1247 . 13 770 Subtilisin-like Serine Gene Family AT5G59810 59.5 1.9e-260 895.6
Cco02g0322 . 15 736 Subtilisin-like Serine Gene Family AT5G59810 59.7 3.5e-254 874.8
Cco10g0393 . 1 764 Subtilisin-like Serine Gene Family AT5G59810 55.1 2.0e-233 805.8
Cco10g0395 . 11 679 Subtilisin-like Serine Gene Family AT5G59810 55.8 2.1e-214 742.7
Cco10g0394 . 1 727 Subtilisin-like Serine Gene Family AT5G59810 51.9 1.5e-212 736.5
Cco10g0396 . 587 1081 Subtilisin-like Serine Gene Family AT5G59810 62.7 1.9e-175 613.2
Cco04g1491 . 8 762 Subtilisin-like Serine Gene Family AT5G67360 72.2 0.0e+00 1104.4
Cco08g1821 . 14 774 Subtilisin-like Serine Gene Family AT5G67360 64.7 8.5e-290 993.0
Cco03g1557 . 29 764 Subtilisin-like Serine Gene Family AT5G67360 56.3 1.6e-232 802.7
Cco09g0103 . 8 759 Subtilisin-like Serine Gene Family AT5G67360 56.1 1.5e-230 796.2
Cco05g0916 . 11 769 Subtilisin-like Serine Gene Family AT5G67360 53.9 8.4e-229 790.4
Cco02g1285 . 12 767 Subtilisin-like Serine Gene Family AT5G67360 51.4 1.0e-210 730.3
Cco09g0134 . 9 784 Subtilisin-like Serine Gene Family AT5G67360 51.4 8.7e-210 727.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000094 2 9 4 4 4 9 0 9 9 7 6 10 16 7 9 22 9 5 21 9 7 5 6 12 12 10 2 10 10 2 247