Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0396 ATGGAGGCTTCCAATCTTTCTCTATTGCTTTTGTTCTTCTTCATCTTCACTCTATTGCAAACTTCCATCATTGCCACCAAAAAGTCTTACATCGTTTACTTGGGTTCGGAATCTTCCTCTTCGTTGGATCCTTTCTCTTTGTCAGGGCACTCCAAACAAGTGACCACATTTCATTATGATTTGTTGGGATCTTTGTTGGGAAGTAAAAAGATGGCTGAGGAAGCAATTTTCTACTCCTATACTAGAAGTTTCAATGGTTTCGCAGCCAAACTTGAAGAGAAAGAAGCAGCAGATCTAGCAAGAAACCCTAAGGTGATATCGGTGTTTGAAAATAAGGCAAGAAAATTGCACACAACACGGTCGTGGAATTTTCTTGGAGTGGAGAACGATGTCGGAATTCCTTCAAACTCCATTTGGAATGCTGCAAAGTTTGGTCAAGATATAATCATAGCCAACATGGACACAGGTGTTTGGCCAGAATCAAAGAGCTTTAGTGATGAAGGGTATGGACCTGTGCCATCAAAGTGGAGGGGCTTTTGTCAAACCGACTCCACCTTCCATTGCAATAGAAAGCTTATTGGAGGAAGATATTTCTACAAAGGATATGTAGCCAGCGGAGGCACTCTCAACGCCACTTTACTCACCGTACGGGACCACGACGGCCATGGAACCCACACTCTCTCCATCGCCGCCGGAAACTTCGTTGCCGAAGCCAACGTTTTTGGCCATGGCAACGGTACAGCCAAAGGCGGTGCTCCAAAAGCCCGTGCCGCCGCCTACAAGGTCTGCTGGCCTTCATTATTTGACTCACAGTGCTTGGAGGCTGATATTCTTGCTGCCTTTGAAGCTGCTGTCGCCGATGGAGTCGACGTCATATCGGCTTCCCTCGGTGGAACCGCCGATGAATATTTCAACGATCCACTTGCTATCGCCGCTTTCCACGCTGTTCAACAAGGCGTTGTCGTCGTCTTCTCCGCTGGCAACTCGGGGCCTTTTCCGATGACCGTCACCAATATTGCCCCCTGGGAAATCACCGTCGCGGCGAGCACCATAGACAGAGATTTCGCCAGTTACGTGGCGATCGGAAACAAGAAACACATCAAGGGTGTAAGTCTTTCTTCAACTGCCCCATTACCGAAGAAGTTCTATCCATTGATCGACTCCGTGAATGCAAAACTCAGCAATGTCACCGAATTCCATGCGCAATTTTGCGGGAAGGGGACGCTTGATCCAATGAAAGTGAAGGGAAAGATAGTGATTTGTCAAACAGGAGAGATTGAAGGAGTGGACAAGAGCTACCAAGCTGCTCGAGCTGGTGCTGTGGGAGTAATTGTAGCTAATGATATTGAAAAAGGAAATGAAATTTATCCTCAATTACACTTCCTTCCAGCTTCAGATATTACCAATACTGATGCTCAATTACTCCAAACATACCTCAAATCCACTACAAATCCAATGGCTCATTTAACAAAAGTCAAAACTCAGCTCAATATCAAACCAGCTCCAGTCATTGCTACCTTCTCTTCTAGAGGCCCCAACCCAATTAGTCCCTCTATTCTCAAGGTCACAGATCTCAACTACCCGTCGATTTCAGTTGGGGAATTGAAAATCGGTGCTCCTGTGACAATTAATAGAAGAGTTAAGAATGTGGGAAGTCCAGGCACATATGTAGCAAGTGTCAAGGCGTCGCCTGGAGTTGCGGTTTCGGTTGAGCCGAGCACGTTGCAGTTTAGTAATGTGGATGAGGAGAAGGCCTTCAAGTCTTACATTGTTTACTTGGGATCACATTCGCACGGGCTGAATCCTTCTGCAGTCGATCTCCAAATCGCAACGGAATCTCACTACAGTTTACTTGGGTCATTGTTAGGAAGCAATGAGGCAGCCAAGGAAGCAATTTTCTATTCCTACAACAGACATATCAATGGCTTTGCAGCCATGCTTGACCAAAAAGTTGCAGAAGATTTAGCAAGAAATCCTGCTGTGGCATCAGTCCATGAGAACAAGGGAAGAAAACTACACACAACAAGTTCATGGAAATTTCTTGGAGTAGAGCATGATGATGGAATTCCAACAAACTCTATTTGGAATCTTGCAAGTTTTGGTGAATCTACAATCATTGCCAACCTTGACACAGGCGTTTGGCCAGAATCAAAGAGTTTCAGTGATGAAGGATATGGACCTGTTCCCACAAGGTGGAGGGGAAGTTGTGAAGGTGGCTCCAAATTTCATTGCAACAGGAAACTGATTGGAGCAAGGTATTTCAACAAAGGGTACGCAGCTTATGTGGGATCCCTCAATGCAAGCTATGAAACAGCAAGAGACCATGAAGGGCATGGAACACACACATTATCTACTGCTGGAGGCAATTTCATTTCAGGGGCTAATGTATTTGGGAATGGTAATGGCACCGCAAAAGGAGGGTCCCCTAAAGCCCTTGTTGCTGCCTATAAAGTATGCTGGCCTCAAGTGGATTCTGGTGGTGCTTGTTTTGATGCTGACATTTTAGCAGCCATTGAAGCTGCTATTAGTGATGGAGTTGATGTTCTCTCACTTTCACTTGGTGGAGATTCCAAAGATTTTTCAGACGACGTTACGGCTATCGGGGCCTTCCATGCCGTTCAACAAGGTATCGTCATTGTTTGCTCTGCTGGAAACTCTGGACCAGCTCCAGGGACAGTAGAAAATGTGGCACCCTGGCTCTTAACTGTGGGTGCTAGCACAATCAACAGACAGTTTACTAGTTATGTGGCCCTTGGAAACAAGAAGCATATCAAGGGTGCAAGTCTTTCTGATAAAATATTGCCAGCTCAGAAATTCTATCCATTGATCAGTGCTGCAGATGCAAAAGCCAACAATGTCTCGTTTGACAATGCCCAACTGTGTGAGGAAGGGTCACTTAATCCCAAAAAGGTAAAAGGGAAGATTATAATTTGCCTTAGAGGGGAAAATGCAAGAATGGACAAAGGTTATGTGGCAGCTCAAGCAGGTGCTGTTGGAATGATTCTTGCTAACACTGAGCAAAATGGGGATGAACTTATAGCTGATGCACACCTACTTCCTGTTTCCCATGTAAGCTATACTGATGGCCAATCAATCTACCAATACATCAATTCCACCAAGACTCCAATGGCTTACATGACTCATGTAAGAACAGAGATGGGAATCAAACCAGCACCAGTTATGGCTTCATTCTCATCAAGAGGTCCCAATACAATTGAAGAGTCAATACTCAAGGTTTCCATTCGTTATACTGTATAA 3258 45.03 MEASNLSLLLLFFFIFTLLQTSIIATKKSYIVYLGSESSSSLDPFSLSGHSKQVTTFHYDLLGSLLGSKKMAEEAIFYSYTRSFNGFAAKLEEKEAADLARNPKVISVFENKARKLHTTRSWNFLGVENDVGIPSNSIWNAAKFGQDIIIANMDTGVWPESKSFSDEGYGPVPSKWRGFCQTDSTFHCNRKLIGGRYFYKGYVASGGTLNATLLTVRDHDGHGTHTLSIAAGNFVAEANVFGHGNGTAKGGAPKARAAAYKVCWPSLFDSQCLEADILAAFEAAVADGVDVISASLGGTADEYFNDPLAIAAFHAVQQGVVVVFSAGNSGPFPMTVTNIAPWEITVAASTIDRDFASYVAIGNKKHIKGVSLSSTAPLPKKFYPLIDSVNAKLSNVTEFHAQFCGKGTLDPMKVKGKIVICQTGEIEGVDKSYQAARAGAVGVIVANDIEKGNEIYPQLHFLPASDITNTDAQLLQTYLKSTTNPMAHLTKVKTQLNIKPAPVIATFSSRGPNPISPSILKVTDLNYPSISVGELKIGAPVTINRRVKNVGSPGTYVASVKASPGVAVSVEPSTLQFSNVDEEKAFKSYIVYLGSHSHGLNPSAVDLQIATESHYSLLGSLLGSNEAAKEAIFYSYNRHINGFAAMLDQKVAEDLARNPAVASVHENKGRKLHTTSSWKFLGVEHDDGIPTNSIWNLASFGESTIIANLDTGVWPESKSFSDEGYGPVPTRWRGSCEGGSKFHCNRKLIGARYFNKGYAAYVGSLNASYETARDHEGHGTHTLSTAGGNFISGANVFGNGNGTAKGGSPKALVAAYKVCWPQVDSGGACFDADILAAIEAAISDGVDVLSLSLGGDSKDFSDDVTAIGAFHAVQQGIVIVCSAGNSGPAPGTVENVAPWLLTVGASTINRQFTSYVALGNKKHIKGASLSDKILPAQKFYPLISAADAKANNVSFDNAQLCEEGSLNPKKVKGKIIICLRGENARMDKGYVAAQAGAVGMILANTEQNGDELIADAHLLPVSHVSYTDGQSIYQYINSTKTPMAYMTHVRTEMGIKPAPVMASFSSRGPNTIEESILKVSIRYTV 1085
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4645176 4657597 + CcPI632755_10g003960.1 Cco10g0396 189354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0396 1085 FunFam Subtilisin-like protease SBT5.3 19 117 - -
Cco10g0396 1085 FunFam subtilisin-like protease SBT1.5 352 496 - -
Cco10g0396 1085 Pfam Fibronectin type-III domain 524 587 IPR041469 -
Cco10g0396 1085 Gene3D Peptidase S8/S53 domain 674 940 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0396 1085 Gene3D Peptidase S8/S53 domain 118 380 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0396 1085 CDD PA_subtilisin_like 915 1044 - -
Cco10g0396 1085 Pfam Subtilase family 701 1071 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco10g0396 1085 CDD Peptidases_S8_3 115 351 IPR034197 -
Cco10g0396 1085 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 573 673 IPR037045 -
Cco10g0396 1085 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 117 IPR037045 -
Cco10g0396 1085 Gene3D - 381 499 - -
Cco10g0396 1085 FunFam Subtilisin-like protease SBT5.3 577 673 - -
Cco10g0396 1085 ProSiteProfiles Serine proteases, subtilase domain profile. 677 1085 - -
Cco10g0396 1085 CDD PA_subtilisin_like 358 487 - -
Cco10g0396 1085 SUPERFAMILY PA domain 403 500 IPR046450 -
Cco10g0396 1085 SUPERFAMILY Subtilisin-like 672 1071 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0396 1085 FunFam subtilisin-like protease SBT1.5 909 1053 - -
Cco10g0396 1085 Pfam Subtilase family 145 519 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco10g0396 1085 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 589 1079 IPR045051 -
Cco10g0396 1085 SUPERFAMILY Subtilisin-like 116 518 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0396 1085 ProSiteProfiles Serine proteases, subtilase domain profile. 121 611 - -
Cco10g0396 1085 SUPERFAMILY PA domain 968 1046 IPR046450 -
Cco10g0396 1085 Pfam Peptidase inhibitor I9 588 673 IPR010259 -
Cco10g0396 1085 Pfam Peptidase inhibitor I9 29 117 IPR010259 -
Cco10g0396 1085 Pfam PA domain 957 1032 IPR003137 -
Cco10g0396 1085 Pfam PA domain 403 475 IPR003137 -
Cco10g0396 1085 Gene3D - 941 1047 - -
Cco10g0396 1085 CDD Peptidases_S8_3 671 908 IPR034197 -
Cco10g0396 1085 FunFam Subtilisin-like protease SBT1.5 703 929 - -
Cco10g0396 1085 FunFam Subtilisin-like protease SBT1.5 147 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0394 Cco-Chr10:4613315 Cco10g0396 Cco-Chr10:4645176 6.40E-194 dispersed
Cco10g0396 Cco-Chr10:4645176 Cco10g0400 Cco-Chr10:4718153 1.20E-183 dispersed
Cco10g0395 Cco-Chr10:4632477 Cco10g0396 Cco-Chr10:4645176 1.80E-158 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0396 - - - 0.0