Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0400 ATGTTTAATTTCCATCTAAAATTAGGCACTACAAATCATCGACGTGCAACCGTGTCTCATTATGATTTATTGGGATTAGTGTTAGGAAGCAAAAGGATAGCCAAAGAAGCTATTTTGTACTCATACAACAAGAACATCAATGGCTTTGCTGCCATGCTTGATGAAAAGCAAGCAGCAGATCTTGCAAAATTTCCGAATGTCGTTTCGGTTTTCGAAAGTCAAGCAAAAAAATTACATACAACACAATCATGGCACTTCCTTGGAATAGAAAAACATGAAGAAATTCCTTTCAACTCCATTTGGAATGCTGCAAAATTTGGTGATAATATAATCATAGCTAACTTTGACACAGGTGTTTGGCCAGAATCTAAGAGCTTCAATGATGAAGGGTATGGACCTGTCCCCTCAAGGTGGAAGGGAACTTGTCAAAGTGATGCAGACCCCAAGTTTCATTGTAACAGAAAATTGATTGGATCAAGATTCTTCAACATAGGCTATGGTGAACTTAGTGTTACCTTCAATTCTTCAAGAGACAGTGTAGGCCATGGAACCCACACTTTATCCATTGCTGGTGGCAATTTTGTCTCTGGAGCTAATGTTTTGGGAATGGGGAACGGAACTATTAAAGGTGGCTCCCCTCGAACCCGTGTTGCGTCCTACAAGGTTTGTTGGCCAGAAGAGAGCCGCGAGTGTTTGGACCCAAATACCTTAGCTGCTTTTGAAGCTGCAATTGGCGATGGCGTTGATGTTATCTCAATTTCTGTCGGTGGAGAGCCAAAGGAGTTTTTTAGTGATGCACTCTCTGTAGGAGCTTTCCATGCAGTTGAGCGAGGTATTGTTGTTGTTTGCTCGGCTGGGAATGTCGGACCAACTCCTGGAACCGTATCAAATGTGTCGCCATGGATTATAACTGTTGGCGCTAGTTCCATCAATAGGGATTTCACTAATTTTGTGGTCCTGGGGAACAAGAAGAAACTCAAGGGTACAAGCTTTTCTTCTAAGGCAATGCCATTTAACAAGTTCTACCCTCTAATCAGTGCTGTGGATGCAAAAGCCAACAATGTCTCCAATAGTGATGCGGAAGTTTGTGAGGAGGGCTCGCTTGATCCCATAAAGTTAACAGGGAAGATTGTGATTTGCCTTCGAGGGGGTCTTCCAAGAGTGTCTAAGGGTTATGTAGCTGCCAAGGCAGGGGCTGTTGGAATGATTTTGGTTAACGATGAGGAAAGTGGGAATGCAATTTTAACTGATATACATATCCTTCCAGCTTCCCATGTAACCTATAATGACAGCATATCCATCTTCCAATACATCAATTCTACAAAGACACCAACGGCTTACATTGGTTCTGTGATGACAGAACTGGAAATCAAACCATCCCCAGTAATGGCTGATTTCTCATCAAGAGGCCCCAATACAATAGAGGAGTCAATCCTTAAGAAGACCTTCGTTTGCGATGGATCGTTCAAAGTGACGGATTTGAATTACCCTTCGATCTCAGTTATAGATCTGAAAATGGGCCCTGTGACGATCAATCGAAAAGTGAAGAATGTGGGAAGTCCGGGGATGTATGTCGCTCGAGTGAAGGCGCCACTGGAAGTTTCTATCATCGTTGAGCCAAGTAGATTGCATTTTACGGGCATGGATGAAGAGAAGAGATTCAAGGTCGTGTTGAATAGCAGTGGAGAGGGCAACGAACAAGGTTATGTGTTTGGGGAATTAGTATGGTCTGATGGCAAACACCATGTTAGGAGTCCAATTGTTGTGAATTTAGGGGAATAG 1782 42.82 MFNFHLKLGTTNHRRATVSHYDLLGLVLGSKRIAKEAILYSYNKNINGFAAMLDEKQAADLAKFPNVVSVFESQAKKLHTTQSWHFLGIEKHEEIPFNSIWNAAKFGDNIIIANFDTGVWPESKSFNDEGYGPVPSRWKGTCQSDADPKFHCNRKLIGSRFFNIGYGELSVTFNSSRDSVGHGTHTLSIAGGNFVSGANVLGMGNGTIKGGSPRTRVASYKVCWPEESRECLDPNTLAAFEAAIGDGVDVISISVGGEPKEFFSDALSVGAFHAVERGIVVVCSAGNVGPTPGTVSNVSPWIITVGASSINRDFTNFVVLGNKKKLKGTSFSSKAMPFNKFYPLISAVDAKANNVSNSDAEVCEEGSLDPIKLTGKIVICLRGGLPRVSKGYVAAKAGAVGMILVNDEESGNAILTDIHILPASHVTYNDSISIFQYINSTKTPTAYIGSVMTELEIKPSPVMADFSSRGPNTIEESILKKTFVCDGSFKVTDLNYPSISVIDLKMGPVTINRKVKNVGSPGMYVARVKAPLEVSIIVEPSRLHFTGMDEEKRFKVVLNSSGEGNEQGYVFGELVWSDGKHHVRSPIVVNLGE 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4718153 4721519 - CcPI632755_10g004000.1 Cco10g0400 189358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0400 593 ProSiteProfiles Serine proteases, subtilase domain profile. 83 593 - -
Cco10g0400 593 FunFam subtilisin-like protease SBT1.5 311 455 - -
Cco10g0400 593 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 481 IPR045051 -
Cco10g0400 593 Gene3D - 311 455 - -
Cco10g0400 593 CDD Peptidases_S8_3 76 310 IPR034197 -
Cco10g0400 593 Pfam Peptidase inhibitor I9 17 79 IPR010259 -
Cco10g0400 593 Pfam Subtilase family 107 484 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco10g0400 593 SUPERFAMILY Subtilisin-like 78 480 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0400 593 CDD PA_subtilisin_like 318 448 - -
Cco10g0400 593 Gene3D - 490 591 - -
Cco10g0400 593 Gene3D Peptidase S8/S53 domain 109 480 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g0400 593 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 4 79 IPR037045 -
Cco10g0400 593 SUPERFAMILY PA domain 370 453 IPR046450 -
Cco10g0400 593 Pfam Fibronectin type-III domain 493 589 IPR041469 -
Cco10g0400 593 Pfam PA domain 359 431 IPR003137 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0400 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0395 Cco-Chr10:4632477 Cco10g0400 Cco-Chr10:4718153 1.50E-173 dispersed
Cco10g0396 Cco-Chr10:4645176 Cco10g0400 Cco-Chr10:4718153 1.20E-183 dispersed
Cco10g0400 Cco-Chr10:4718153 Cco10g1903 Cco-Chr10:32583886 3.20E-98 dispersed
Cco10g0399 Cco-Chr10:4707476 Cco10g0400 Cco-Chr10:4718153 1.90E-154 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g753 . . . . . . . . Cmo16g01043 . . . . . . . . . . . . . . . Cla10g00388 Cam10g0388 Cec10g0409 Cco10g0400 Clacu10g0395 Cmu10g1229 Cre10g0644 . . . Cone15ag1283 . Csa03g00396 . Cme06g02725 . . . . . . . . . . . . . . . Cpe14g00805 . Bhi11g00429 . . . Hepe06g0677 . . . . . . . . . . . Chy06g01918 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000094 2 9 4 4 4 9 0 9 9 7 6 10 16 7 9 22 9 5 21 9 7 5 6 12 12 10 2 10 10 2 247