Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0404 ATGCGAAAGCCCACCATTTCAGGAAAGAAAAATCCTTCTAATTGTTCTCATCTTGCTCCCGATCGACGACAACCGAAGCTTCTCTTTTGGTTTCTTCCACTGCAGGCTAAGTCTTCGCGAAAATTTTGCTACCCTGAGTTGGCTTCAAGTCTCTTCAACCTTTTTTGCTTTGCTTTTATCTGCTATTTACGGTTTCAAGTTGCTAAAAGAATGTTGGAGAGTTTTGCTTACAAGAGCGTGAAGATTGTAATCTTCACAAATAAACTCAACTTCCTGATGCCTTTTGGGCCTCTAGCAATTCTTGTGGATAAGTTGGCTGGACACAATAGTGGGGTCTTCTTCCTGAGTCTATTGGGTATCATACCATTGGCTGAGCGGTTAGGTTATGCCACAGAGCAGCTAGCTTTTTACACTGGTCCTACAGCTGGTGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAGCTGATTATATCAATTTTTGCCCTGAGAAGTCAAATGATACGTGTTGTTCAGCTATCATTGCTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTATAAAAAGGAACAGACCTTTAACAAGGCAACTGCTGTTGTCAACTCAGGGTTGTTGTTAATGGCTGTCATGGGCCTGCTTTTTCCCGCTCTTCTCTACTACACCCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTTTCGAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGTCAGACGAATCTTTATTCTTCCGTTTATGAGGTTCAGGAAGAAATTCAGAGTGAAGAAAGCTCAGATGAAGATGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGCCTGGATCTCTGTTCTATCAAAATATCTGGTCGATGCAATTGAAATTGCATCTGAATCATTGAAAATCCCAGTATCATTTATTAGTGTTGTACTGCTTCCAATTGTGGGGAATGCCGCTGAGCATGCAAGTGCAATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATTGGATCATCGACCCAGATATCTATGTTTGGGATTCCTTTCTGTGTCGTAACTGGGTGGATTATGGGACAACCAATGGACTTAAACTTCCAACTCTTCGAGACGGCAACACTTTTTATAACTGTAATTGTCGTAGCTTTCTTGCTCCAGGAAGGAACTTCAAATTACTTCAAGGGACTGATGCTCATCCTTTGTTATCTGATAGTTGCTGCTAGTTTTTTCGTGCACGTCGATCCTCCTTTACCCGAGAATAAACTGGGGAGTCTGAAAGCGTAG 1389 41.83 MRKPTISGKKNPSNCSHLAPDRRQPKLLFWFLPLQAKSSRKFCYPELASSLFNLFCFAFICYLRFQVAKRMLESFAYKSVKIVIFTNKLNFLMPFGPLAILVDKLAGHNSGVFFLSLLGIIPLAERLGYATEQLAFYTGPTAGGLLNATFGNATELIISIFALRSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKATAVVNSGLLLMAVMGLLFPALLYYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQTNLYSSVYEVQEEIQSEESSDEDEAPEISKWESVIWLSILTAWISVLSKYLVDAIEIASESLKIPVSFISVVLLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFQLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLPENKLGSLKA 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4771914 4778146 + CcPI632755_10g004040.1 Cco10g0404 189362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0404 462 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 68 450 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cco10g0404 462 NCBIfam calcium/proton exchanger 93 445 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cco10g0404 462 Gene3D - 289 446 IPR044880 -
Cco10g0404 462 Gene3D - 140 284 IPR044880 -
Cco10g0404 462 FunFam Vacuolar cation/proton exchanger 290 446 - -
Cco10g0404 462 Pfam Sodium/calcium exchanger protein 302 444 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g0404 462 Pfam Sodium/calcium exchanger protein 111 266 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g0404 462 FunFam Vacuolar cation/proton exchanger 140 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1143 Cco-Chr2:19353910 Cco10g0404 Cco-Chr10:4771914 1.90E-156 dispersed
Cco07g1500 Cco-Chr7:29074926 Cco10g0404 Cco-Chr10:4771914 2.90E-151 dispersed
Cco10g0404 Cco-Chr10:4771914 Cco10g2192 Cco-Chr10:34992493 4.60E-89 dispersed
Cco10g0404 Cco-Chr10:4771914 Cco04g0890 Cco-Chr4:24556687 2.00E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0404 K07300 - csv:101205761 636.721