Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0408 | ATGACTACCACGGCGGAGGAAACAACCATCACTTTCTCCTCCGATCATGGCGCCGCCCAAGAACAACAACACTACGCTTACGCTATGCAGCTGGTTACCTCATCGGTGCTGCCAATGACACTCCAAGCAGTGTTCGAGCTCGGTGTGTTCGAGATCTTGGCAAAGGCTGGGGATGGGGCCAAGCTCTCTCCGCCAGAGATAGCGGCTGAGATAACTACGACAAACCCGGATGCAGCGTCGATGATTGATCGGATGTTGAGGCTTCTCGCCAGCCACTCGGTGGTGGGATGCTCTGTGGGATTTGATGAAGATGGGAAAATGCAGAGACTTTATAGCCTTACGCCAGTTTCTAAGTATTATGCTCGCAATCAAGATGGTGTCTCGTTGGGTCCAACTTTGTCGTTGATTCAAGATAAAGTCTTTCTCCAGAGCTGGAGTGAGCTAAAGAATGCAGTTATTGAAGGAGGAGTTCCTTTCAATAGGGCTCATGGGGGAGTTCATGCCTTTGAATATCCAGGCTTGGATCCAAGATTTAACCAAGTTTTCAATGCTGCAATGATAAATCACACCACTATAGCCATCAAGAAAATTGTCAAATCCTACAAAGGCTTTGAAAACATCAAGCAACTAGTTGATGTTGGTGGTGGCCTTGGGGTCACCCTTCACATCATCACTTCTACATACCCTTCCATCAAAGGCATCAACTTCGACCTACCTCATGTTATTCGCGATGCCCCTCCCTATTATGGTGTAGAACATGTGGGAGGAGACATGTTTGAGAAAGTTCCAAATGGAGATGCTGTTTTCATGAAGTGGATACTTCATGATTGGAGTGACGAGGATTGTGTAAAGTTATTGAAAAATTGCTACGTTGCAATCCCAAATGAAGGAAAGGTAATCATAGTGGACTCAGTGGTTCCAACAGTACCTGAAACCACAGATGTAACAAAATGCATTGCCCAAGGCGATGTGCTTATGATGACTCAAAATCCAGGAGGAAAGGAACGAACTCGAGATGAATTCGAGGCCCTCGCAACCAAAGCTGGGTTTAAACATGTCATATTCCAGTGCTTTGTGTCTAATCTCTGGGTTATAGAGTTTCTTAAAAATTAA | 1113 | 45.46 | MTTTAEETTITFSSDHGAAQEQQHYAYAMQLVTSSVLPMTLQAVFELGVFEILAKAGDGAKLSPPEIAAEITTTNPDAASMIDRMLRLLASHSVVGCSVGFDEDGKMQRLYSLTPVSKYYARNQDGVSLGPTLSLIQDKVFLQSWSELKNAVIEGGVPFNRAHGGVHAFEYPGLDPRFNQVFNAAMINHTTIAIKKIVKSYKGFENIKQLVDVGGGLGVTLHIITSTYPSIKGINFDLPHVIRDAPPYYGVEHVGGDMFEKVPNGDAVFMKWILHDWSDEDCVKLLKNCYVAIPNEGKVIIVDSVVPTVPETTDVTKCIAQGDVLMMTQNPGGKERTRDEFEALATKAGFKHVIFQCFVSNLWVIEFLKN | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4849876 | 4852662 | - | CcPI632755_10g004080.1 | Cco10g0408 | 189366 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0408 | 370 | Pfam | Dimerisation domain | 39 | 90 | IPR012967 | GO:0046983(InterPro) | |
Cco10g0408 | 370 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 29 | 369 | IPR016461 | GO:0008168(InterPro) | |
Cco10g0408 | 370 | FunFam | Caffeic acid 3-O-methyltransferase | 5 | 120 | - | - | |
Cco10g0408 | 370 | Gene3D | Vaccinia Virus protein VP39 | 121 | 369 | IPR029063 | - | |
Cco10g0408 | 370 | Pfam | O-methyltransferase domain | 145 | 351 | IPR001077 | GO:0008171(InterPro) | |
Cco10g0408 | 370 | PANTHER | O-METHYLTRANSFERASE | 24 | 356 | IPR016461 | GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER) | |
Cco10g0408 | 370 | SUPERFAMILY | Winged helix DNA-binding domain | 20 | 123 | IPR036390 | - | |
Cco10g0408 | 370 | Gene3D | - | 6 | 120 | IPR036388 | - | |
Cco10g0408 | 370 | FunFam | Caffeic acid O-methyltransferase | 121 | 369 | - | - | |
Cco10g0408 | 370 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 126 | 367 | IPR029063 | - | |
Cco10g0408 | 370 | PIRSF | O-mtase | 6 | 369 | IPR016461 | GO:0008168(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g1817 | Cco-Chr7:32265124 | Cco10g0408 | Cco-Chr10:4849876 | 4.20E-114 | dispersed | |
Cco10g0408 | Cco-Chr10:4849876 | Cco10g1292 | Cco-Chr10:25821098 | 2.50E-29 | dispersed | |
Cco10g0407 | Cco-Chr10:4831260 | Cco10g0408 | Cco-Chr10:4849876 | 1.80E-154 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0408 | K13066 | - | csv:101214916 | 588.956 |