Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0408 ATGACTACCACGGCGGAGGAAACAACCATCACTTTCTCCTCCGATCATGGCGCCGCCCAAGAACAACAACACTACGCTTACGCTATGCAGCTGGTTACCTCATCGGTGCTGCCAATGACACTCCAAGCAGTGTTCGAGCTCGGTGTGTTCGAGATCTTGGCAAAGGCTGGGGATGGGGCCAAGCTCTCTCCGCCAGAGATAGCGGCTGAGATAACTACGACAAACCCGGATGCAGCGTCGATGATTGATCGGATGTTGAGGCTTCTCGCCAGCCACTCGGTGGTGGGATGCTCTGTGGGATTTGATGAAGATGGGAAAATGCAGAGACTTTATAGCCTTACGCCAGTTTCTAAGTATTATGCTCGCAATCAAGATGGTGTCTCGTTGGGTCCAACTTTGTCGTTGATTCAAGATAAAGTCTTTCTCCAGAGCTGGAGTGAGCTAAAGAATGCAGTTATTGAAGGAGGAGTTCCTTTCAATAGGGCTCATGGGGGAGTTCATGCCTTTGAATATCCAGGCTTGGATCCAAGATTTAACCAAGTTTTCAATGCTGCAATGATAAATCACACCACTATAGCCATCAAGAAAATTGTCAAATCCTACAAAGGCTTTGAAAACATCAAGCAACTAGTTGATGTTGGTGGTGGCCTTGGGGTCACCCTTCACATCATCACTTCTACATACCCTTCCATCAAAGGCATCAACTTCGACCTACCTCATGTTATTCGCGATGCCCCTCCCTATTATGGTGTAGAACATGTGGGAGGAGACATGTTTGAGAAAGTTCCAAATGGAGATGCTGTTTTCATGAAGTGGATACTTCATGATTGGAGTGACGAGGATTGTGTAAAGTTATTGAAAAATTGCTACGTTGCAATCCCAAATGAAGGAAAGGTAATCATAGTGGACTCAGTGGTTCCAACAGTACCTGAAACCACAGATGTAACAAAATGCATTGCCCAAGGCGATGTGCTTATGATGACTCAAAATCCAGGAGGAAAGGAACGAACTCGAGATGAATTCGAGGCCCTCGCAACCAAAGCTGGGTTTAAACATGTCATATTCCAGTGCTTTGTGTCTAATCTCTGGGTTATAGAGTTTCTTAAAAATTAA 1113 45.46 MTTTAEETTITFSSDHGAAQEQQHYAYAMQLVTSSVLPMTLQAVFELGVFEILAKAGDGAKLSPPEIAAEITTTNPDAASMIDRMLRLLASHSVVGCSVGFDEDGKMQRLYSLTPVSKYYARNQDGVSLGPTLSLIQDKVFLQSWSELKNAVIEGGVPFNRAHGGVHAFEYPGLDPRFNQVFNAAMINHTTIAIKKIVKSYKGFENIKQLVDVGGGLGVTLHIITSTYPSIKGINFDLPHVIRDAPPYYGVEHVGGDMFEKVPNGDAVFMKWILHDWSDEDCVKLLKNCYVAIPNEGKVIIVDSVVPTVPETTDVTKCIAQGDVLMMTQNPGGKERTRDEFEALATKAGFKHVIFQCFVSNLWVIEFLKN 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4849876 4852662 - CcPI632755_10g004080.1 Cco10g0408 189366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0408 370 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983(InterPro)
Cco10g0408 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 369 IPR016461 GO:0008168(InterPro)
Cco10g0408 370 FunFam Caffeic acid 3-O-methyltransferase 5 120 - -
Cco10g0408 370 Gene3D Vaccinia Virus protein VP39 121 369 IPR029063 -
Cco10g0408 370 Pfam O-methyltransferase domain 145 351 IPR001077 GO:0008171(InterPro)
Cco10g0408 370 PANTHER O-METHYLTRANSFERASE 24 356 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Cco10g0408 370 SUPERFAMILY Winged helix DNA-binding domain 20 123 IPR036390 -
Cco10g0408 370 Gene3D - 6 120 IPR036388 -
Cco10g0408 370 FunFam Caffeic acid O-methyltransferase 121 369 - -
Cco10g0408 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 367 IPR029063 -
Cco10g0408 370 PIRSF O-mtase 6 369 IPR016461 GO:0008168(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1817 Cco-Chr7:32265124 Cco10g0408 Cco-Chr10:4849876 4.20E-114 dispersed
Cco10g0408 Cco-Chr10:4849876 Cco10g1292 Cco-Chr10:25821098 2.50E-29 dispersed
Cco10g0407 Cco-Chr10:4831260 Cco10g0408 Cco-Chr10:4849876 1.80E-154 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0408 K13066 - csv:101214916 588.956