Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0413 ATGGGTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGACCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAATACTACGGGTCGGCCCAGGTAG 528 56.25 MGDSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFNTTGRPR 175
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 4919341 4919868 + CcPI632755_10g004130.1 Cco10g0413 189371
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0413 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cco10g0413 175 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982(InterPro)
Cco10g0413 175 Gene3D Histone, subunit A 11 135 IPR009072 GO:0046982(InterPro)
Cco10g0413 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 124 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cco10g0413 175 MobiDBLite consensus disorder prediction 154 175 - -
Cco10g0413 175 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cco10g0413 175 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cco10g0413 175 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cco10g0413 175 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0413 175 FunFam Nuclear transcription factor Y subunit B-3 13 135 - -
Cco10g0413 175 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1497 Cco-Chr2:27515262 Cco10g0413 Cco-Chr10:4919341 4.30E-41 dispersed
Cco07g1001 Cco-Chr7:22986281 Cco10g0413 Cco-Chr10:4919341 4.60E-42 dispersed
Cco09g0586 Cco-Chr9:5161785 Cco10g0413 Cco-Chr10:4919341 3.40E-39 dispersed
Cco10g0413 Cco-Chr10:4919341 Cco10g0431 Cco-Chr10:5087489 8.90E-33 dispersed
Cco10g0413 Cco-Chr10:4919341 Cco10g2051 Cco-Chr10:33891831 4.70E-42 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60066 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0413 K08065 - csv:101204640 310.457