Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0431 ATGGAATGTGGAGGAACTGCTCAAGGAGGAGGAGATGGCTTCCATAGCTATAAAAGGCAACACCCTAAACCAACTTCTGCACTGAATATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAATGGTGGAGCCGCCACCGGCAACTCCCCAGCAACCAGCCCCGTCCCGGTGGCGACCGCAAACAATGAGCAAAGCCAACAATGCGTGGTGCGGGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCCGACGATGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAACGTTGCCAACGGGAGCAGCGCAAGACGGTAACAGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACCGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCATACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGTGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA 714 55.32 MECGGTAQGGGDGFHSYKRQHPKPTSALNMLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5087489 5090535 + CcPI632755_10g004310.1 Cco10g0431 189389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0431 237 MobiDBLite consensus disorder prediction 22 77 - -
Cco10g0431 237 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 88 151 IPR003958 -
Cco10g0431 237 FunFam Nuclear transcription factor Y subunit B-6 76 188 - -
Cco10g0431 237 Gene3D Histone, subunit A 74 188 IPR009072 GO:0046982(InterPro)
Cco10g0431 237 MobiDBLite consensus disorder prediction 1 77 - -
Cco10g0431 237 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 70 177 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cco10g0431 237 PRINTS CCAAT-binding transcription factor subunit A signature 134 152 - -
Cco10g0431 237 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Cco10g0431 237 PRINTS CCAAT-binding transcription factor subunit A signature 153 171 - -
Cco10g0431 237 ProSitePatterns NF-YB/HAP3 subunit signature. 118 134 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0431 237 SUPERFAMILY Histone-fold 84 177 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0413 Cco-Chr10:4919341 Cco10g0431 Cco-Chr10:5087489 8.90E-33 dispersed
Cco10g0431 Cco-Chr10:5087489 Cco10g2051 Cco-Chr10:33891831 1.10E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60067 PF00808 CBFD_NFYB_HMF 3.00E-25 CL0012 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0431 K08065 - csv:116402762 379.022