Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0431 | ATGGAATGTGGAGGAACTGCTCAAGGAGGAGGAGATGGCTTCCATAGCTATAAAAGGCAACACCCTAAACCAACTTCTGCACTGAATATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCGAACAGCAACCACCACCTCTCCAATGGTGGAGCCGCCACCGGCAACTCCCCAGCAACCAGCCCCGTCCCGGTGGCGACCGCAAACAATGAGCAAAGCCAACAATGCGTGGTGCGGGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGGCGGATCTTGCCCTCCCATGCAAAGATATCCGACGATGCCAAAGAGACTATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATAACTGGCGAGGCGAACGAACGTTGCCAACGGGAGCAGCGCAAGACGGTAACAGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATCGAACCGCTAACCGTTTTCCTCAACCGCTATCGTGAGTCGGAGAGTGACCGAATTCGCACTGAGCCGATTTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGGATGATGCCACCATACGGGCAGGCATTTCAAATAGGGCACGTCCCAGCGGGGATGTTCGATGCAATGGGTGGATACTATGGCGGAGGCGGGAGCGGGGGGCCGAGCGCGGGGAATGGTAGCCAGCTTTGA | 714 | 55.32 | MECGGTAQGGGDGFHSYKRQHPKPTSALNMLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPVPVATANNEQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5087489 | 5090535 | + | CcPI632755_10g004310.1 | Cco10g0431 | 189389 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0431 | 237 | MobiDBLite | consensus disorder prediction | 22 | 77 | - | - | |
Cco10g0431 | 237 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 88 | 151 | IPR003958 | - | |
Cco10g0431 | 237 | FunFam | Nuclear transcription factor Y subunit B-6 | 76 | 188 | - | - | |
Cco10g0431 | 237 | Gene3D | Histone, subunit A | 74 | 188 | IPR009072 | GO:0046982(InterPro) | |
Cco10g0431 | 237 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
Cco10g0431 | 237 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 70 | 177 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Cco10g0431 | 237 | PRINTS | CCAAT-binding transcription factor subunit A signature | 134 | 152 | - | - | |
Cco10g0431 | 237 | PRINTS | CCAAT-binding transcription factor subunit A signature | 115 | 133 | - | - | |
Cco10g0431 | 237 | PRINTS | CCAAT-binding transcription factor subunit A signature | 153 | 171 | - | - | |
Cco10g0431 | 237 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 118 | 134 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0431 | 237 | SUPERFAMILY | Histone-fold | 84 | 177 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g0413 | Cco-Chr10:4919341 | Cco10g0431 | Cco-Chr10:5087489 | 8.90E-33 | dispersed | |
Cco10g0431 | Cco-Chr10:5087489 | Cco10g2051 | Cco-Chr10:33891831 | 1.10E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60067 | PF00808 | CBFD_NFYB_HMF | 3.00E-25 | CL0012 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0431 | K08065 | - | csv:116402762 | 379.022 |