Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0438 ATGGAGGAATCAACGCCAATTTTCAAGAATCTTCACAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTACATTCTGTGGCATGGAATTGCACGGGCATGAAGCTTGCTTCCGGTTCCGTTGATCAAACTGCTCGAGTTTGGCATATTGAGCCTCACGGACATGGTAAGGTTAAGGATGTTGAGTTGAAAGGGCACACTGATAGTGTAGATCAGCTATGCTGGGACCCTAAACATTCTGATCTTATAGCGACTGCATCTGGGGACAAGACCGTTCGACTATGGGATGCTCGTAATGGGAAATGCTCTCAGCAAGCTGAGCTCAGTGGGGAAAATATCAACATCACCTACAAACCTGATGGTACACACATAGCTGTTGGGAATAGGGATGATGAACTTACAATTCTGGATGTTAGGAAGTTTAAACCTGTTCACAAGCGCAAGTTCAATTATGAGGTGAATGAAATTGCTTGGAACATGACTGGGGAGATGTTTTTCTTGACAACTGGAAATGGTACTGTTGAAGTACTAGCATACCCGTCGCTTCGACCAATTGAAACTCTTATGGCCCATACAGCTGGTTGTTACTGCATTGCAATTGACCCAGTTGGAGGGTACTTTGCTGTTGGAAGTGCTGATTCATTAGTTAGCCTATGGGATATCTCTCAGATGCTCTGCGTGCGAACATTTACAAAACTCGAATGGCCTGTCAGAACAATAAGTTTCAACCACACAGGAGAATACATTGCTTCTGCCAGCGAGGACTTGTTCATTGATATATCAAATGTTCAAACGGGACGAACGGTCCATCAGATTCCTTGTCGGGCTGCGATGAACAGTGTGGAGTGGAATCCAAAACACAATTTACTTGCATATGCTGGGGATGACAAGAACAAGTATCAGGCTGATGAAGGCAAGTTATCTGTGCATTGA 930 44.3 MEESTPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGKLSVH 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5162307 5165247 + CcPI632755_10g004380.1 Cco10g0438 189396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0438 309 SUPERFAMILY WD40 repeat-like 9 296 IPR036322 GO:0005515(InterPro)
Cco10g0438 309 ProSitePatterns Trp-Asp (WD) repeats signature. 82 96 IPR019775 -
Cco10g0438 309 Pfam WD domain, G-beta repeat 14 47 IPR001680 GO:0005515(InterPro)
Cco10g0438 309 Pfam WD domain, G-beta repeat 61 95 IPR001680 GO:0005515(InterPro)
Cco10g0438 309 Pfam WD domain, G-beta repeat 183 219 IPR001680 GO:0005515(InterPro)
Cco10g0438 309 SMART WD40_4 55 95 IPR001680 GO:0005515(InterPro)
Cco10g0438 309 SMART WD40_4 9 48 IPR001680 GO:0005515(InterPro)
Cco10g0438 309 SMART WD40_4 222 261 IPR001680 GO:0005515(InterPro)
Cco10g0438 309 SMART WD40_4 264 302 IPR001680 GO:0005515(InterPro)
Cco10g0438 309 SMART WD40_4 139 177 IPR001680 GO:0005515(InterPro)
Cco10g0438 309 SMART WD40_4 180 219 IPR001680 GO:0005515(InterPro)
Cco10g0438 309 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 50 - -
Cco10g0438 309 CDD WD40 12 296 - -
Cco10g0438 309 PRINTS G protein beta WD-40 repeat signature 82 96 IPR020472 -
Cco10g0438 309 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Cco10g0438 309 PRINTS G protein beta WD-40 repeat signature 35 49 IPR020472 -
Cco10g0438 309 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 100 - -
Cco10g0438 309 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 221 - -
Cco10g0438 309 FunFam THO complex subunit 3 2 166 - -
Cco10g0438 309 Pfam Anaphase-promoting complex subunit 4 WD40 domain 235 283 IPR024977 -
Cco10g0438 309 Gene3D - 168 300 IPR015943 GO:0005515(InterPro)
Cco10g0438 309 Gene3D - 7 167 IPR015943 GO:0005515(InterPro)
Cco10g0438 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515(InterPro)
Cco10g0438 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515(InterPro)
Cco10g0438 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 104 IPR001680 GO:0005515(InterPro)
Cco10g0438 309 FunFam THO complex subunit 3 176 309 - -
Cco10g0438 309 PANTHER THO COMPLEX SUBUNIT 3 THO3 5 308 IPR040132 GO:0000445(PANTHER)|GO:0006406(InterPro)|GO:0006406(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0438 K12880 - - csv:101219355 630.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1473 Cco-Chr4:30166011 Cco10g0438 Cco-Chr10:5162307 1.60E-09 dispersed
Cco10g0240 Cco-Chr10:2541373 Cco10g0438 Cco-Chr10:5162307 2.00E-07 dispersed
Cco10g0438 Cco-Chr10:5162307 Cco11g1705 Cco-Chr11:29889341 7.10E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g733 . . . . . . . . . Cmo06g00674 . . . . . . . . . . . . . . Cla10g00428 Cam10g0426 Cec10g0448 Cco10g0438 Clacu10g0433 Cmu10g1264 Cre10g0681 . . . Cone15ag1293 . . . . Blo07g00859 . . . . Bpe03g00740 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g00517 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011335 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30