Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0443 ATGGACCCCACTGACTCCGACCTCGCCGATCCATCTCATGCCTCCTCCTCCGCTGGCGCTAAGTACAAGCTCATGTCTCCGGCCAAGCTTCCGATCTCTAGGTCCCCTTGCATTACCATCCCACCTGGCCTCAGCCCCACTTCCTTTCTCGACTCTCCTGTTCTGCTTACCAACTTGAAGGTAGAGCCTTCTCCGACTACTGGGTCCTTTACCAAGCTTCCGATGGCACATGACTCTTCTAGCTCAGCTATTTATCCAGTGACCACCATGGCTTTCTCAAATACTAATGCCTCAGATGAAGGAAGATCCAACTACTTCGAGTTCAAACCATATGTTGGACCAAATATGGTTCCTGCAGATTTGAGTCATAGGAAAGGTGAACAATCTTCTGAAGTTCAAGTTCAAGGTCAACCTCAACCATTTACTGCTCCACCCATGACTAAAATTGAGATCAATGTCGCTTCAAATGATTTGAGCCGATCAACCCAGATGGATACACATCCAGTTAGCTCAGGGGCTAGTGCTCCTGAAGTCGATGGAGATGATATCAACCATAGTTTGAACACAAATAGCAGGGTTCAGGCTCCACAATCTGATCCAAAAGGCAGTGGCATTCCAGTGGTTTCAGATAGGTTGTCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCTCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCCCATGATGGGCAAATAGCTGATATTATCTATAAGGGTACCCACGATCATCCTAAGCCTCAGCCAAGCCGGCGATATTCTGCCAGTGCTTCTGTGAATGTTCAAGAAGATGGGCCTGATAAGCCTTCACCTTTAACTGGCCAAGATGACAGATTGTTCGGCATGTATGCTCAGACAGTTCATACCCTTGAGCCAAATGGAACTACAGAACCATCACTGGCTGCAAATGATAGCATCAACGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCAGGATGAGGTTGAAGACGATGACATATTCTCGAAGCGGAGGAAAATGGAACTTGGTGGTTTCGATGTCTGCCCAATGGTTAAACCAATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGTGAGGTAGATATACTGGATGACGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAATCCCAACCCAAGGAGTTATTACAAATGCACAAATGTTGGATGCCCTGTTAGAAAACATGTCGAAAGAGCATCCCATGACCCAAAAGCTGTTATAACTACGTATGAGGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCATGATGTCGGGGGTCCATCGACAATTGCACCATCGAGGTATAGACTCGAGGAGAGCGACACCATAAGCCTTGATCTTGGCGTTGGCATTGGCACTGGCACGGGTGGTGAGAATAGATCAAATGATTACAGGCAGGCATTGCATTCACAACTTGTTGAAAACCAAACTCCAAATGGCAATTTCAACTTTGAAGTAGTTCAAGAGAACTCAGCCCCGACCTATTTCGGTGTGATCAATAGAGGTATAAATCAACATGGATCGAGAGAGAGTTTGAGTGAAAGCCACAATAGGGAGATTGCTCCGCTAAATCATTCGTCTCACCCATATCCGACGAGCATTGGGAGAATACTAACAGGGCCTTAA 1728 46.12 MDPTDSDLADPSHASSSAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYPVTTMAFSNTNASDEGRSNYFEFKPYVGPNMVPADLSHRKGEQSSEVQVQGQPQPFTAPPMTKIEINVASNDLSRSTQMDTHPVSSGASAPEVDGDDINHSLNTNSRVQAPQSDPKGSGIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIADIIYKGTHDHPKPQPSRRYSASASVNVQEDGPDKPSPLTGQDDRLFGMYAQTVHTLEPNGTTEPSLAANDSINEGAGTTLPCKNQDEVEDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVGGPSTIAPSRYRLEESDTISLDLGVGIGTGTGGENRSNDYRQALHSQLVENQTPNGNFNFEVVQENSAPTYFGVINRGINQHGSRESLSESHNREIAPLNHSSHPYPTSIGRILTGP 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5212577 5218216 - CcPI632755_10g004430.1 Cco10g0443 189401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0443 575 MobiDBLite consensus disorder prediction 128 142 - -
Cco10g0443 575 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 94 457 IPR044810 GO:0003700(InterPro)
Cco10g0443 575 MobiDBLite consensus disorder prediction 125 144 - -
Cco10g0443 575 Gene3D WRKY domain 207 273 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0443 575 Pfam WRKY DNA -binding domain 214 270 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0443 575 Pfam WRKY DNA -binding domain 390 447 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0443 575 ProSiteProfiles WRKY domain profile. 384 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0443 575 MobiDBLite consensus disorder prediction 551 567 - -
Cco10g0443 575 MobiDBLite consensus disorder prediction 264 302 - -
Cco10g0443 575 SUPERFAMILY WRKY DNA-binding domain 381 449 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0443 575 MobiDBLite consensus disorder prediction 183 198 - -
Cco10g0443 575 ProSiteProfiles WRKY domain profile. 208 272 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0443 575 MobiDBLite consensus disorder prediction 1 20 - -
Cco10g0443 575 FunFam WRKY transcription factor 33 376 442 - -
Cco10g0443 575 SUPERFAMILY WRKY DNA-binding domain 210 272 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0443 575 Gene3D WRKY domain 376 442 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0443 575 MobiDBLite consensus disorder prediction 541 575 - -
Cco10g0443 575 MobiDBLite consensus disorder prediction 160 209 - -
Cco10g0443 575 MobiDBLite consensus disorder prediction 445 468 - -
Cco10g0443 575 FunFam WRKY transcription factor 204 273 - -
Cco10g0443 575 SMART WRKY_cls 389 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0443 575 SMART WRKY_cls 213 271 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0443 Cco-Chr10:5212577 Cco11g0470 Cco-Chr11:5016895 1.20E-70 dispersed
Cco02g0288 Cco-Chr2:2624356 Cco10g0443 Cco-Chr10:5212577 2.00E-66 transposed
Cco03g1070 Cco-Chr3:18671074 Cco10g0443 Cco-Chr10:5212577 2.00E-09 transposed
Cco10g0387 Cco-Chr10:4528770 Cco10g0443 Cco-Chr10:5212577 1.40E-82 transposed
Cco03g1071 Cco-Chr3:18674904 Cco10g0443 Cco-Chr10:5212577 1.60E-65 transposed
Cco10g0443 Cco-Chr10:5212577 Cco04g1962 Cco-Chr4:33908900 3.90E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60069 PF03106 WRKY 3.30E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0443 - - - 0.0