Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0443 | ATGGACCCCACTGACTCCGACCTCGCCGATCCATCTCATGCCTCCTCCTCCGCTGGCGCTAAGTACAAGCTCATGTCTCCGGCCAAGCTTCCGATCTCTAGGTCCCCTTGCATTACCATCCCACCTGGCCTCAGCCCCACTTCCTTTCTCGACTCTCCTGTTCTGCTTACCAACTTGAAGGTAGAGCCTTCTCCGACTACTGGGTCCTTTACCAAGCTTCCGATGGCACATGACTCTTCTAGCTCAGCTATTTATCCAGTGACCACCATGGCTTTCTCAAATACTAATGCCTCAGATGAAGGAAGATCCAACTACTTCGAGTTCAAACCATATGTTGGACCAAATATGGTTCCTGCAGATTTGAGTCATAGGAAAGGTGAACAATCTTCTGAAGTTCAAGTTCAAGGTCAACCTCAACCATTTACTGCTCCACCCATGACTAAAATTGAGATCAATGTCGCTTCAAATGATTTGAGCCGATCAACCCAGATGGATACACATCCAGTTAGCTCAGGGGCTAGTGCTCCTGAAGTCGATGGAGATGATATCAACCATAGTTTGAACACAAATAGCAGGGTTCAGGCTCCACAATCTGATCCAAAAGGCAGTGGCATTCCAGTGGTTTCAGATAGGTTGTCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCTCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCCCATGATGGGCAAATAGCTGATATTATCTATAAGGGTACCCACGATCATCCTAAGCCTCAGCCAAGCCGGCGATATTCTGCCAGTGCTTCTGTGAATGTTCAAGAAGATGGGCCTGATAAGCCTTCACCTTTAACTGGCCAAGATGACAGATTGTTCGGCATGTATGCTCAGACAGTTCATACCCTTGAGCCAAATGGAACTACAGAACCATCACTGGCTGCAAATGATAGCATCAACGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCAGGATGAGGTTGAAGACGATGACATATTCTCGAAGCGGAGGAAAATGGAACTTGGTGGTTTCGATGTCTGCCCAATGGTTAAACCAATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGTGAGGTAGATATACTGGATGACGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAATCCCAACCCAAGGAGTTATTACAAATGCACAAATGTTGGATGCCCTGTTAGAAAACATGTCGAAAGAGCATCCCATGACCCAAAAGCTGTTATAACTACGTATGAGGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCATGATGTCGGGGGTCCATCGACAATTGCACCATCGAGGTATAGACTCGAGGAGAGCGACACCATAAGCCTTGATCTTGGCGTTGGCATTGGCACTGGCACGGGTGGTGAGAATAGATCAAATGATTACAGGCAGGCATTGCATTCACAACTTGTTGAAAACCAAACTCCAAATGGCAATTTCAACTTTGAAGTAGTTCAAGAGAACTCAGCCCCGACCTATTTCGGTGTGATCAATAGAGGTATAAATCAACATGGATCGAGAGAGAGTTTGAGTGAAAGCCACAATAGGGAGATTGCTCCGCTAAATCATTCGTCTCACCCATATCCGACGAGCATTGGGAGAATACTAACAGGGCCTTAA | 1728 | 46.12 | MDPTDSDLADPSHASSSAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYPVTTMAFSNTNASDEGRSNYFEFKPYVGPNMVPADLSHRKGEQSSEVQVQGQPQPFTAPPMTKIEINVASNDLSRSTQMDTHPVSSGASAPEVDGDDINHSLNTNSRVQAPQSDPKGSGIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIADIIYKGTHDHPKPQPSRRYSASASVNVQEDGPDKPSPLTGQDDRLFGMYAQTVHTLEPNGTTEPSLAANDSINEGAGTTLPCKNQDEVEDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVGGPSTIAPSRYRLEESDTISLDLGVGIGTGTGGENRSNDYRQALHSQLVENQTPNGNFNFEVVQENSAPTYFGVINRGINQHGSRESLSESHNREIAPLNHSSHPYPTSIGRILTGP | 575 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5212577 | 5218216 | - | CcPI632755_10g004430.1 | Cco10g0443 | 189401 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0443 | 575 | MobiDBLite | consensus disorder prediction | 128 | 142 | - | - | |
Cco10g0443 | 575 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 94 | 457 | IPR044810 | GO:0003700(InterPro) | |
Cco10g0443 | 575 | MobiDBLite | consensus disorder prediction | 125 | 144 | - | - | |
Cco10g0443 | 575 | Gene3D | WRKY domain | 207 | 273 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0443 | 575 | Pfam | WRKY DNA -binding domain | 214 | 270 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0443 | 575 | Pfam | WRKY DNA -binding domain | 390 | 447 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0443 | 575 | ProSiteProfiles | WRKY domain profile. | 384 | 449 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0443 | 575 | MobiDBLite | consensus disorder prediction | 551 | 567 | - | - | |
Cco10g0443 | 575 | MobiDBLite | consensus disorder prediction | 264 | 302 | - | - | |
Cco10g0443 | 575 | SUPERFAMILY | WRKY DNA-binding domain | 381 | 449 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0443 | 575 | MobiDBLite | consensus disorder prediction | 183 | 198 | - | - | |
Cco10g0443 | 575 | ProSiteProfiles | WRKY domain profile. | 208 | 272 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0443 | 575 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cco10g0443 | 575 | FunFam | WRKY transcription factor 33 | 376 | 442 | - | - | |
Cco10g0443 | 575 | SUPERFAMILY | WRKY DNA-binding domain | 210 | 272 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0443 | 575 | Gene3D | WRKY domain | 376 | 442 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0443 | 575 | MobiDBLite | consensus disorder prediction | 541 | 575 | - | - | |
Cco10g0443 | 575 | MobiDBLite | consensus disorder prediction | 160 | 209 | - | - | |
Cco10g0443 | 575 | MobiDBLite | consensus disorder prediction | 445 | 468 | - | - | |
Cco10g0443 | 575 | FunFam | WRKY transcription factor | 204 | 273 | - | - | |
Cco10g0443 | 575 | SMART | WRKY_cls | 389 | 448 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0443 | 575 | SMART | WRKY_cls | 213 | 271 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g0443 | Cco-Chr10:5212577 | Cco11g0470 | Cco-Chr11:5016895 | 1.20E-70 | dispersed | |
Cco02g0288 | Cco-Chr2:2624356 | Cco10g0443 | Cco-Chr10:5212577 | 2.00E-66 | transposed | |
Cco03g1070 | Cco-Chr3:18671074 | Cco10g0443 | Cco-Chr10:5212577 | 2.00E-09 | transposed | |
Cco10g0387 | Cco-Chr10:4528770 | Cco10g0443 | Cco-Chr10:5212577 | 1.40E-82 | transposed | |
Cco03g1071 | Cco-Chr3:18674904 | Cco10g0443 | Cco-Chr10:5212577 | 1.60E-65 | transposed | |
Cco10g0443 | Cco-Chr10:5212577 | Cco04g1962 | Cco-Chr4:33908900 | 3.90E-21 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60069 | PF03106 | WRKY | 3.30E-25 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0443 | - | - | - | 0.0 |