Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0444 ATGATGCCTAGTATGATGACAGAGTCATCAGAGAAGGAGACAGAGGCATTTGTAGAGGTGGATCCGACGGGTCGATATGGGCGGTACGGGGAGCTTCTGGGGACAGGGGCGGTGAAGAAAGTGTACAGAGCATTTGATCAAGAAGAAGGAATAGAGGTAGCTTGGAACCAAGTGAAACTAAGGAGTTTTTCAAATGATCCATCCATGATAGATAGGTTGTATTCAGAGGTGAGATTGTTAAGAACCTTAAAGAACAACAACATAATTGCCTTGTATGATGTTTGGCTTGACAAACTTCATGGAACCTTAAATTTCATTACTGAGGTTTGTACAAGTGGAAACCTTAGAGAGTACAGGAAGAAGCATAGGCAAGTCTCTTTGAAAGCTTTGAAGAAATGGTCCAAACAAATTCTTAAGGGTTTGCATTATTTGCATACTCATGACCCTTGTGTTATTCATAGAGATCTCAACTGTAGCAACCTCTTTGTCAATGGCAATGTTGGCCAGGTAAAGATTGGTGACTTGGGTTTAGCAGCAACTGTGAGAAAGAATCACTCAGCTCATTCAGTGCTTGGGACACCAGAATTCATGGCACCTGAGCTATATGAAGAGCATTACACCGAGCTTGTGGACATATATTCATTTGGAATGTGTTTGCTTGAATTAGTCACTTTGGAAATTCCCTATAGTGAATGTGACAATGTTGCCAAAATCTATAAAAAAGTCTCCTCAGGCATCAAGCCTCAATCCCTTGACAAGGTCAAGGACCCTGAAGTCAAGGCTTTCATCGAGAATTGCCTTGCCGAATCCCGAGCTCGACCCTCAGCTGCTGACCTCCTCCGCCACCCCTTCTTCGGAGAAATTGATGATGACGAAAATGACGACGACAATGATCATTAA 900 42.78 MMPSMMTESSEKETEAFVEVDPTGRYGRYGELLGTGAVKKVYRAFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVRLLRTLKNNNIIALYDVWLDKLHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILKGLHYLHTHDPCVIHRDLNCSNLFVNGNVGQVKIGDLGLAATVRKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVSSGIKPQSLDKVKDPEVKAFIENCLAESRARPSAADLLRHPFFGEIDDDENDDDNDH 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5243342 5245636 + CcPI632755_10g004440.1 Cco10g0444 189402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0444 299 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Cco10g0444 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 286 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cco10g0444 299 FunFam probable serine/threonine-protein kinase WNK9 110 291 - -
Cco10g0444 299 SUPERFAMILY Protein kinase-like (PK-like) 29 290 IPR011009 -
Cco10g0444 299 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Cco10g0444 299 CDD STKc_WNK 25 285 - -
Cco10g0444 299 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Cco10g0444 299 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0444 299 PIRSF TyrPK_CSF1-R 26 131 - -
Cco10g0444 299 PIRSF TyrPK_CSF1-R 120 282 - -
Cco10g0444 299 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1045 Cco-Chr6:14725954 Cco10g0444 Cco-Chr10:5243342 5.80E-100 dispersed
Cco09g1096 Cco-Chr9:10472057 Cco10g0444 Cco-Chr10:5243342 7.70E-12 dispersed
Cco10g0444 Cco-Chr10:5243342 Cco06g0604 Cco-Chr6:6570251 8.90E-25 dispersed
Cco10g0444 Cco-Chr10:5243342 Cco02g1766 Cco-Chr2:30431794 7.60E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87136 PF00069 Pkinase 2.20E-51 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0444 K08867 - csv:101221172 552.747