Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0444 | ATGATGCCTAGTATGATGACAGAGTCATCAGAGAAGGAGACAGAGGCATTTGTAGAGGTGGATCCGACGGGTCGATATGGGCGGTACGGGGAGCTTCTGGGGACAGGGGCGGTGAAGAAAGTGTACAGAGCATTTGATCAAGAAGAAGGAATAGAGGTAGCTTGGAACCAAGTGAAACTAAGGAGTTTTTCAAATGATCCATCCATGATAGATAGGTTGTATTCAGAGGTGAGATTGTTAAGAACCTTAAAGAACAACAACATAATTGCCTTGTATGATGTTTGGCTTGACAAACTTCATGGAACCTTAAATTTCATTACTGAGGTTTGTACAAGTGGAAACCTTAGAGAGTACAGGAAGAAGCATAGGCAAGTCTCTTTGAAAGCTTTGAAGAAATGGTCCAAACAAATTCTTAAGGGTTTGCATTATTTGCATACTCATGACCCTTGTGTTATTCATAGAGATCTCAACTGTAGCAACCTCTTTGTCAATGGCAATGTTGGCCAGGTAAAGATTGGTGACTTGGGTTTAGCAGCAACTGTGAGAAAGAATCACTCAGCTCATTCAGTGCTTGGGACACCAGAATTCATGGCACCTGAGCTATATGAAGAGCATTACACCGAGCTTGTGGACATATATTCATTTGGAATGTGTTTGCTTGAATTAGTCACTTTGGAAATTCCCTATAGTGAATGTGACAATGTTGCCAAAATCTATAAAAAAGTCTCCTCAGGCATCAAGCCTCAATCCCTTGACAAGGTCAAGGACCCTGAAGTCAAGGCTTTCATCGAGAATTGCCTTGCCGAATCCCGAGCTCGACCCTCAGCTGCTGACCTCCTCCGCCACCCCTTCTTCGGAGAAATTGATGATGACGAAAATGACGACGACAATGATCATTAA | 900 | 42.78 | MMPSMMTESSEKETEAFVEVDPTGRYGRYGELLGTGAVKKVYRAFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVRLLRTLKNNNIIALYDVWLDKLHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILKGLHYLHTHDPCVIHRDLNCSNLFVNGNVGQVKIGDLGLAATVRKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVSSGIKPQSLDKVKDPEVKAFIENCLAESRARPSAADLLRHPFFGEIDDDENDDDNDH | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5243342 | 5245636 | + | CcPI632755_10g004440.1 | Cco10g0444 | 189402 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0444 | 299 | FunFam | Probable serine/threonine-protein kinase WNK1 | 11 | 108 | - | - | |
Cco10g0444 | 299 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 9 | 286 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Cco10g0444 | 299 | FunFam | probable serine/threonine-protein kinase WNK9 | 110 | 291 | - | - | |
Cco10g0444 | 299 | SUPERFAMILY | Protein kinase-like (PK-like) | 29 | 290 | IPR011009 | - | |
Cco10g0444 | 299 | Gene3D | Transferase(Phosphotransferase) domain 1 | 110 | 290 | - | - | |
Cco10g0444 | 299 | CDD | STKc_WNK | 25 | 285 | - | - | |
Cco10g0444 | 299 | Gene3D | Phosphorylase Kinase; domain 1 | 10 | 108 | - | - | |
Cco10g0444 | 299 | ProSiteProfiles | Protein kinase domain profile. | 27 | 285 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g0444 | 299 | PIRSF | TyrPK_CSF1-R | 26 | 131 | - | - | |
Cco10g0444 | 299 | PIRSF | TyrPK_CSF1-R | 120 | 282 | - | - | |
Cco10g0444 | 299 | Pfam | Protein kinase domain | 30 | 285 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1045 | Cco-Chr6:14725954 | Cco10g0444 | Cco-Chr10:5243342 | 5.80E-100 | dispersed | |
Cco09g1096 | Cco-Chr9:10472057 | Cco10g0444 | Cco-Chr10:5243342 | 7.70E-12 | dispersed | |
Cco10g0444 | Cco-Chr10:5243342 | Cco06g0604 | Cco-Chr6:6570251 | 8.90E-25 | dispersed | |
Cco10g0444 | Cco-Chr10:5243342 | Cco02g1766 | Cco-Chr2:30431794 | 7.60E-101 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87136 | PF00069 | Pkinase | 2.20E-51 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0444 | K08867 | - | csv:101221172 | 552.747 |