Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0445 ATGGAATCAGATCTTGGCAAGCTCTTCATTGGCGGAATTTCGTGGGATACTGATGAAGAGCGTCTTAGGGAATATTTTGGCAACTATGGCGAAGTGGTCGAGGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGCTGTTGCCGAGCGAGTCATTTTGGAGAAGCACGTGATCGATGGTCGAACTGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAATAGTGGTAGCATTCATGGTTCTCCTAGCTCGGGACGAACAAAAAAGATTTTCGTTGGAGGTTTAGCTTCGACAGTCACTGAGGCTGACTTTCAGAAGTATTTTGATCAGTTTGGAACAATCACTGATGTTGTTGTTATGTATGATCACAGCACCCAAAGGCCAAGGGGTTTTGGCTTCATTACTTATGACTCGGAGGAGTCTGTTGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAGATGGTTGAGGTTAAGAGAGCAATCCCGAAAGAGCTAACCCCAGGGCCCAACCGGAGCCCTCTTGTAGGATATAACTATGGTATGAGTAGGCCTAGTGGTTTTCTTAACAGCTATACTCAAAGCTATAATATGAGTCCTTTGGGAAGTTATGGAGTCCGGGCAGATGGTAGGTTGAGTCCAATAATTAGCAGTCGAACTGGGGTTCCTCATTTTGGTACTGCTAATTATGGAGTGGGTGTGAATTTGGAGCAAGGGATGAGACAAGGCTATGGCAGGACTTTGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAATTCCTATTATAATGGCAATTCAAATAGGTACATTGCCCCGATTGGCTACAGCGGGGGCAATGGAAGAGGCGATTCCCCCTTAAGCTCAAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACCGCCATGAACTCTTCCGGCCCTGGCACTTTCTCTGGCTCTGGAACGGGGAACTTCAGAGTGGCATATGGAAATAACGATGATAGTTGGAGTTTGCCTGCTGTTGTTAATCATGTTGGAGGGAATGCTCCTGGCTATACTAATAATGGTTATGCAATTGGAGACAATGAGCTCGGGTTCAGAGGAGGCTATGGAAGAAATGGAGTAGTCTCGAATGTGGCAACACGAAAAGCATTTGTTGAAACGACCAATGGTTATGAGAGGTCATATAGGGATTTGTATCGTGATGAAGTGGTGCATGATGATTCGACTTGGCAGTCTGCTGCTCCTGAACTGGATGGTTCTGTATCTTTTGGTTATGGTCTTGGTAACCTTGCTTCAGATGATCCAGCCAAGAGTTCCGAGAGTTTTCTTGCAAGTTATGATGTTTCAAGCAGACAATCAACTAGAGGAATTGCTGCGTAG 1431 45.21 MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERVILEKHVIDGRTVEAKKAVPKDDQNMLNRNSGSIHGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSYNMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQEQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGSGTGNFRVAYGNNDDSWSLPAVVNHVGGNAPGYTNNGYAIGDNELGFRGGYGRNGVVSNVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDPAKSSESFLASYDVSSRQSTRGIAA 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5252259 5254171 + CcPI632755_10g004450.1 Cco10g0445 189403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0445 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723(InterPro)
Cco10g0445 476 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Cco10g0445 476 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 368 - GO:0003729(PANTHER)|GO:0006417(PANTHER)
Cco10g0445 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Cco10g0445 476 SUPERFAMILY RNA-binding domain, RBD 104 205 IPR035979 GO:0003676(InterPro)
Cco10g0445 476 SMART rrm1_1 107 179 IPR000504 GO:0003723(InterPro)
Cco10g0445 476 SMART rrm1_1 7 78 IPR000504 GO:0003723(InterPro)
Cco10g0445 476 Pfam RNA recognition motif 108 166 IPR000504 GO:0003723(InterPro)
Cco10g0445 476 Pfam RNA recognition motif 8 73 IPR000504 GO:0003723(InterPro)
Cco10g0445 476 CDD RRM2_Hrp1p 107 184 - -
Cco10g0445 476 Gene3D - 103 189 IPR012677 -
Cco10g0445 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Cco10g0445 476 Gene3D - 6 88 IPR012677 -
Cco10g0445 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723(InterPro)
Cco10g0445 476 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0445 K14411 - - csv:101220541 907.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1041 Cco-Chr2:13638799 Cco10g0445 Cco-Chr10:5252259 2.70E-110 dispersed
Cco02g1371 Cco-Chr2:25863773 Cco10g0445 Cco-Chr10:5252259 3.20E-32 dispersed
Cco05g2922 Cco-Chr5:36737850 Cco10g0445 Cco-Chr10:5252259 2.70E-27 dispersed
Cco06g0757 Cco-Chr6:8724231 Cco10g0445 Cco-Chr10:5252259 8.50E-67 dispersed
Cco10g0445 Cco-Chr10:5252259 Cco10g1371 Cco-Chr10:26739012 9.80E-42 dispersed
Cco10g0445 Cco-Chr10:5252259 Cco01g1146 Cco-Chr1:16758857 3.70E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g609 . . . . Bpe09g00137 . Bma10g00587 Bma13g01106 Cmo16g00980 Cmo06g00879 . . . . . . . . . . . . . . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 Cone6ag0030 Cone9ag0029 Cone14ag1200 Cone15ag1220 . Csa03g00443 . Cme06g02800 Blo07g00874 . Bda05g00687 Bda12g00948 . Bpe03g00761 . . . . . . Cma16g00941 . Car16g00905 Cpe14g00765 . Bhi11g00503 Tan01g1803 . . . . . . . . . . . . Lsi05g00527 . Chy06g01874 .
Vvi19g706 . . . . Bpe09g00116 . . Bma13g01125 . . Cma01g01065 Cma09g01022 Car01g00939 Car09g00926 Sed08g1410 Cpe06g00830 Cpe02g00832 Bhi09g01794 Tan01g3210 Cmetu01g2405 . . Mch11g1296 . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 . . . . Lsi02g01814 . . . . . Bda05g00687 Bda12g00975 . Bpe03g00748 . . . Cmo01g01107 Cmo09g01025 . . . . . . . . . . . . . Cla09g02092 Cam09g2178 Cec09g2244 . . . . . . Chy01g01127 Cme01g00879
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003655 1 5 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 0 4 3 2 46