Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0447 ATGAAGTCGAATACGGCAGAATCAATGGAGACTGGTTTCTTGGGAAACATATCTGCTTCTTCCTTTCGAAACTTCCTTCCTCGATCCATCTCTTCTAAGAAAAACCTCATTTCCTCCATTTCTAAGAAAACTCCTAAATCTAACTCTGAAAATACCCCTCCTGTTCACCCAAACATTCCTCTCAAGGAAAATCAAATTCCCATTTCCAAGTCCGCCTTCACTCCAGATTCCAATCTCGATCTGTCTGCATCGCAACCTCTTAATTTGAAGGATGAAGTTGTCCAATCAGACTGTCAGTATGAAGCTCCTAACCCCCCTGATCCACCGATCAAGGTGGTTGTGAGAATTAGACCTAATGATAGAGAGGAGGAAGTGGAGAGGACGGTTAAGAGGGTTTCTTCAGATGAATTGACGTTTGGGGACCGTAAATTTTCTTTCGATTCGGTTTTCGATTCAGATTCAAAACAGGAAGATATCTTTTCGAAGATCGGAATTCCGCTAGTCAAAGATGCATTGGCTGGTTACAACACTTCCATCATGTCATTTGGTCAGACGGGAAGTGGTAAGACATTCACAATGTGGGGTCCCCCAAGTGCCATGGTTGAAGACCCTTCACCATTTAGTAGCCAAGGTCTTGCTCCTCGCATCTTCCAGATGCTATTTTCAGAGATTCAAAAAGAACAAGAGAATTCTGAAGGAAAATTGATAAATTATCAGTGTCGATGTTCTTTTGTAGAGATATTTAATGAACAAATTGGGGATTTGCTTGATCCTACGCAGAGGGACCTTAAGATAAAGGATGATGCAAAGAATGGACTGTATGTGGAGAATGTCACAGAGGAATACGTCACAAGCTATGATGATGTGACTCAAATTCTTATCAAGGGACTTTCAAGTAGAAAAGTGGGAGCAACCACTATAAATTCTAAGAGCTCTAGGTCTCATATTGTGTTTACTTTCATTCTTGAGTCATGGTGCAAGGAAACATCATCGAAGTGCTTTGGTAGTTCAAAGACAAGCAGAATCAGCCTTGTTGATCTTGCTGGATTGGATAGGAATGTAAATGATGCCCAGGGTAGACAATCCACAAGAGAAGGCAAGAATTTGAAGAAGTCTATGTCTCGGCTTGGGCAATTGATCGATTCATTATCTAAAGAAACTGAATTAAGACCATCTGAAGATCGTTTGTACAGAGGTTCCTGCTTGACCCATTTATTAAGAGAATCATTGGGGGGAAATGCCAAGCTCACAGTTATTTGTGCTATCTCTCCGGATAACAACTATTCAGGTGAGACATTAAGGACGTTAAGATTTGGACAACGATTGAAATCCATTAAGAATCAACCAATCATAAATGAAATAAAAGAAGATGACGTAAATGATCTGAGTGATCAAATTCGTCAACTAAAGGAAGAACTTATAAGAGCAAATGCCAATTCAGGAAAGTCAGTTGGAAAGACAGGTTACTTTCAAGGGCCTAATGTAAGAGACAGCCTGAATCATTTAAGAGTTAGTATCAATCGCTCTCTGATTTTGCCATGCATTGATAATGACTCAGACGAAGAGGTTAGTTGTAATGAGAAAGATGTGAGGGAATTGCATGAGCAACTGGATAAGGTCCATAGCTTCTCTGAAGAGAACTCAGATAAAAGAGATTCACTTCACTTTTCCTCTGTTGGAGAAAGTTTTGCTTCATATTCAATGAGTGATGATGAAGTAAGTTATCCCCAAACAATTGAAGAAATAAAACCAGAAGAACATCAGGATGAAAATTTTGATGAGGATAAGATTATGTTAGCAGATAATCTTAGTAGCCATGATTCCAAGGTTCCTGATCCTGTGAATCGAAGGAGTATTTCTGTCAGCTCATTCTATCACTTTCCTAATCTTGAAGATCCACCCTTGTCCGAGTCTCCAAAAATTGGAAATTCTCATAGGAAAAGTTTGGCTGTTGCACCAAGTTTTGCAGACCACCATGAAAGTAAGATGTCAGACAGCTTTAAGTTTAATAAAGATGTACTGAGGCAGTCACTGAGTCAGAGTAAGAACATCAGATCCTCGCTTCGATCGAGCAATAAATTCGAGGATCCTACTGAGTCATTGGCAGCTAGTCTTCAAAGAGGTTTGAAGATAATTGATTATCACCAGCAAAGCTCAGCATTAAACAAATCTTCAGTATCCTTCTCCTTTGAACACCTGGCGCGAAAATCATGTCCAGAAGTCAACAAAGCTGTAGCGTCTCTTCAAACATTGGAAGAAGATAATGCCATCGCCATATCTTCTCCCCATCAGCTTTGTGCATCTTGCCAAAGAAGAATTTTCGAGAATGACACTAATGAAGTCCTGAGTAGCTCCAACGAACTCGTAGCAGTAAACCAATCCAGGAATCTCAATGCTGTGGTAGGATTCAAGCAGGGAGACGACCTTGAAAAGGAGAGTGTACAAGAGAAATGTGAAATAAAGGAAGTGCAGGAGGTTCAGAACAATGAAAATTGTTTTACTGATGTGTCTGAGAAGGAAGAACTTCTCAAAGAAATTCAAAATTTAAGGAGTAAGCTGCAGGCGTTTGCTGATGTTTCTGCTAACAAGTCAACTGACAAGCTGAGATCGTCGCTATTGTTGTCACGCTCCATCCAACTAAGGAAAAGCGGTCTAGGAAGAGGAGGTTGCCAAACTACTAATGAGGAGGAACTTGAAAAGGAAAGGGAGAGATGGACTGAAATGGAGAGTGAGTGGATTTCTTTAACTGATGAACTGAGAGTTGATTTGGAATCCATTCGACAGCGTGCGGAGAAGGTGGAGCAGGAACTGAACACGGAGAAGAAATGCAATGAGGAGTTGGAGGATGCCCTCCACAGATCTGTTCTTGGACATGCTAGATTTGTGGAGCATTATGCTGAATTGCAAGAGAAATATAATGAGTTGGTTGGTAAACACCGTGCCATCATGGGAGGGATAGCTGAGGTGAAAAGGGCTGCACAAAAGGCTGGTTCCAAAGGCCACGGTTCTCGCTTTTCGAAATCACTTGCTGCTGAGCTTTCAGCTCTGAGATTTGAGAGGGACAGAGAGAGAGAATTCTTGAAAAAGGAAAACAAAAGCCTTAAGCTCCAACTTAGAGACACTGCTGAAGCTGTTCATGCTGCTGGGGAACTTCTTGTTAGGCTTAGAGAAGCAGAAAATTCAGCATCAGTTGCAGAGGAGAACTTTACATCAGTTCAACAAGAGAACGAGAAGTTGAAGAAGCAAATGGAGAAGCTTAAAAGAAAACATAAAATGGAGATGATTACAATGAGGCAATACCTTGCAGAGAGTAAGTTGCCAGCTTCAGCTCTAGGACCACTGTATGACGATCACTCCGACCTCGGAACCCACAAGAGAGCCTCGTACATGGACGATGATCAAGCCTGGAGATCAGAATTTGGAGCTATATATCAAGAGCAGCACTACTAA 3450 41.19 MKSNTAESMETGFLGNISASSFRNFLPRSISSKKNLISSISKKTPKSNSENTPPVHPNIPLKENQIPISKSAFTPDSNLDLSASQPLNLKDEVVQSDCQYEAPNPPDPPIKVVVRIRPNDREEEVERTVKRVSSDELTFGDRKFSFDSVFDSDSKQEDIFSKIGIPLVKDALAGYNTSIMSFGQTGSGKTFTMWGPPSAMVEDPSPFSSQGLAPRIFQMLFSEIQKEQENSEGKLINYQCRCSFVEIFNEQIGDLLDPTQRDLKIKDDAKNGLYVENVTEEYVTSYDDVTQILIKGLSSRKVGATTINSKSSRSHIVFTFILESWCKETSSKCFGSSKTSRISLVDLAGLDRNVNDAQGRQSTREGKNLKKSMSRLGQLIDSLSKETELRPSEDRLYRGSCLTHLLRESLGGNAKLTVICAISPDNNYSGETLRTLRFGQRLKSIKNQPIINEIKEDDVNDLSDQIRQLKEELIRANANSGKSVGKTGYFQGPNVRDSLNHLRVSINRSLILPCIDNDSDEEVSCNEKDVRELHEQLDKVHSFSEENSDKRDSLHFSSVGESFASYSMSDDEVSYPQTIEEIKPEEHQDENFDEDKIMLADNLSSHDSKVPDPVNRRSISVSSFYHFPNLEDPPLSESPKIGNSHRKSLAVAPSFADHHESKMSDSFKFNKDVLRQSLSQSKNIRSSLRSSNKFEDPTESLAASLQRGLKIIDYHQQSSALNKSSVSFSFEHLARKSCPEVNKAVASLQTLEEDNAIAISSPHQLCASCQRRIFENDTNEVLSSSNELVAVNQSRNLNAVVGFKQGDDLEKESVQEKCEIKEVQEVQNNENCFTDVSEKEELLKEIQNLRSKLQAFADVSANKSTDKLRSSLLLSRSIQLRKSGLGRGGCQTTNEEELEKERERWTEMESEWISLTDELRVDLESIRQRAEKVEQELNTEKKCNEELEDALHRSVLGHARFVEHYAELQEKYNELVGKHRAIMGGIAEVKRAAQKAGSKGHGSRFSKSLAAELSALRFERDREREFLKKENKSLKLQLRDTAEAVHAAGELLVRLREAENSASVAEENFTSVQQENEKLKKQMEKLKRKHKMEMITMRQYLAESKLPASALGPLYDDHSDLGTHKRASYMDDDQAWRSEFGAIYQEQHY 1149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5277351 5283294 + CcPI632755_10g004470.1 Cco10g0447 189405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0447 1149 PRINTS Kinesin heavy chain signature 174 195 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco10g0447 1149 PRINTS Kinesin heavy chain signature 305 322 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco10g0447 1149 PRINTS Kinesin heavy chain signature 341 359 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco10g0447 1149 PRINTS Kinesin heavy chain signature 395 416 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco10g0447 1149 MobiDBLite consensus disorder prediction 37 55 - -
Cco10g0447 1149 Coils Coil 839 859 - -
Cco10g0447 1149 Gene3D Kinesin motor domain 107 485 IPR036961 -
Cco10g0447 1149 Coils Coil 916 950 - -
Cco10g0447 1149 Coils Coil 452 479 - -
Cco10g0447 1149 Pfam Kinesin motor domain 124 445 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco10g0447 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 478 IPR027417 -
Cco10g0447 1149 PANTHER KINESIN-LIKE PROTEIN KIN-12D 91 477 IPR044986 -
Cco10g0447 1149 FunFam Kinesin-like protein KIN-12F 105 484 - -
Cco10g0447 1149 ProSiteProfiles Kinesin motor domain profile. 109 445 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco10g0447 1149 Coils Coil 1024 1044 - -
Cco10g0447 1149 Coils Coil 1048 1096 - -
Cco10g0447 1149 MobiDBLite consensus disorder prediction 37 64 - -
Cco10g0447 1149 SMART kinesin_4 107 453 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0447 K10400 - - csv:101203593 1965.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0853 Cco-Chr5:7189325 Cco10g0447 Cco-Chr10:5277351 2.40E-162 dispersed
Cco09g1971 Cco-Chr9:33854281 Cco10g0447 Cco-Chr10:5277351 1.30E-72 dispersed
Cco10g0447 Cco-Chr10:5277351 Cco10g1871 Cco-Chr10:32307492 6.80E-49 dispersed
Cco10g0447 Cco-Chr10:5277351 Cco03g0190 Cco-Chr3:1948141 3.10E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g604 . . . . Bpe09g00138 . Bma10g00586 Bma13g01105 Cmo16g00977 . . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1198 Cone15ag1218 . Csa03g00446 . Cme06g02803 Blo07g00875 . Bda05g00688 . . Bpe03g00762 . . . . . . Cma16g00939 . Car16g00903 Cpe14g00763 . Bhi11g00510 . . . . . . . . . . . . . Lsi05g00529 . Chy06g01871 .
Vvi19g658 . . . . . . . Bma13g01112 . Cmo06g00688 . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1216 Cone15ag1237 . . . . . Blo10g00863 . Bda12g00961 . . . . . . . . . . . Cpe14g00791 . . . . . . . . . . . . . . . Lsi05g00493 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004807 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 4 1 1 40