Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0456 ATGATGGAATTTGACTCCCTCTCCGGCCGTGGTCAATACGACGTTGATCCAATTCAACTCAAATTGGACTTCAATTCCTCCTCCCATAGGTTGATGATGGCACCTTCTGATATATGGATAAAGGAATATAATGAAGCCTCTAAGCTTGGTGATGATATCAATGGCATGATTTCTCAAAGGAGTTCCTTTCCTGCAACTGGACCAGATTCCCAACGTCATGCCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGCAAAGCAGCCCCTGTCTGAAAAGGAGATAAATCGACGTAAAGACATGCTTGCTCAGATGAGATCAAAAGTAAAGCAGATGGCCTCAACGTTGAACATGTCAAACTTTGCTAACCGAGACAGTTTGCTTGGCCCAGATATGAAATCGGCGGATGTAATGAGCAAGACTGCTGGACTAGACAATCAAGGACTTGTTGGTTTTCAAAGACAAATCATGAAGGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCTTTAGCAGTTAATGAAGAACTCGATCTTCACACTCGCCTAATTGATGACTTGGACCAACATGTTGATGTTACAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGCAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTTGGGATGCTTCTGTCTGTGGTTGGTATTGTGGGAATGAGAATGGAAGACCATGAGACCCACCTGATTACGTTGGTAAGTGTATTTTTACAAAATTGCCATTTCTCTGTCCTCTGGTCCTTGTCCTTGGGTACTATTCTATTCTCCTTCACCATCGCACAGTCTGTGCTCAAGGTATCTCCAGATCGTGTGCGATGGTCATTGTATAGACAAGTAGTGAGAGCGCGTAAACGTAGTGAGGTCATGACTGTAACGGCGTTCAACGGACCCAACCGGCCAGCCTCTGAACCGGAGAACGACCGGCCGGTGCCGTCTGCCGTTGCTGCTGACCTTCTCCTTCCAGGGGAAATTGTCCAGAACGAACACTATAAATATTTTGATAATATGAGCGTTGTTCCGAAGGAGTCGATTGAAATCGTTGCGGAGAGCATTGGGATTTCCAACCTTTCCCCTGAGGTTGCTCTTGCTCTCACTCCCGATGTCGAGTACCGGGTCCGTGAAATCATGCAGGAGGCAGTTAAATGCATGCGTCATTCAAAGCGAACTGTTCTCACTTCCATTGATGTTGATAATGCACTTAAATTAAGAAACTTAGAGCCAATATATGGCTTTGCTGCATGCGATAGTTTGCGGTTCAAAAGAGCTGTTGGACACAAGGATCTCTTTTACATTGATGACAAGGATGTGGAGTTAAATAATGTTATTGAGTCACCTTTAGCAAAAGCAACGGTTGATACTTCAGTTGTTGCTCACTGGCTGGCAGTTGAAGGTGTTCAGCCTGCAGTTGCAGAGAACTTGCTGACTGAAGAACCCCATGATGGAAAGAAATCCGACTTGAAGGAGGAAGAACTTCCTTATGACTCTAAAGCACCTACTAAGCATGTGATTTCAAGGGATCTTCAGCTTTACTTTGAGAAAATAACTGGTCTGGTCTTGAACAAGTCTGGGTCAAATCTCTTCAGAGAAGCTTTAAGGAGCTTGTCAGTTGACTCAGGAATTCAACCTTTGCTTCCATACTTCACATGCTTCATTGCTGATGAGGTTTCAAAAAATCTATGTAATTCTCAACTCTTGATTGCTTTGATGAGGATGGTCTGGTGCCTTCTCCGAAATCCACAGATACATATGGCACCTTATTTACACCAATTGATGCCATCCATCATTACCTGCCTTGTTGCCAAACAATTAGGTAAAAGATTATCTGACAATCATTGGGAGCTTAGAGACTTAGCGGCAAGCCTGGTTTCTTTGATATGCAAAAGATTTGGACATACTTATCACAACATTCAACCTCGTGTTACAAAGACTCTTCTCCATGTTTTCTTGGACCCCTCAAAATTATTGCCTCAGCATTATGGTGCAGTTCAGGGGCTAGCAGATCTTGGTCCCGATGTGGTCCGCCAGCTTATACTACCAAATATTGAACCGTATATGCAATATCTAGAGATGGAGAAGCAAAAGAATGAAACTAGGAGACATGAAGCTTGGCAAGTTTACAGGACCTTACTGCATGCAGCTGGTAAATGCATGCATGGTTGGCTGAAGGTTTTTCCTCTCTCTCTATATCCACCAATGTGTAGTACTTCGAAGATAAATGCGAAGATCAATGGGCAAGTCGTGAAGACAATTTCAAATAAACGCAAAGCCAGTGCAGACAACTCCGTGCAGCAACCAGCACTCAAAAAGATGGCAATGGATAGTGCATTGGGTGCAATCCCGATGAACTCCATGATGGTCGATATGCAAGGGGCTGCATCTGGGCTCCCCACACCGCTCGGAGGTTCAAACATCGGCGTCGCTCGAAATTTTCCAAATGAAATGAGGGTAGGGAGGGACGGTGAACTAGGCTTTAAGGGTTCTACTGCTCTTTCTATAGCATGGAAAGAGGATTTGGATGCTGGGTCATTGCTGACTTCGCTTTTTCCACTTTTTGGGGAAGATCTGTTTCCCTTCATCCCAAAACCCGAGCTATCCTTCTTTCTGTGA 2706 44.27 MMEFDSLSGRGQYDVDPIQLKLDFNSSSHRLMMAPSDIWIKEYNEASKLGDDINGMISQRSSFPATGPDSQRHASAIRRKITILGTKVDGLESLLLKLPAKQPLSEKEINRRKDMLAQMRSKVKQMASTLNMSNFANRDSLLGPDMKSADVMSKTAGLDNQGLVGFQRQIMKEQDEGLEKLEETIISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLARVQKRLAILNKRAKGSCSCFGMLLSVVGIVGMRMEDHETHLITLVSVFLQNCHFSVLWSLSLGTILFSFTIAQSVLKVSPDRVRWSLYRQVVRARKRSEVMTVTAFNGPNRPASEPENDRPVPSAVAADLLLPGEIVQNEHYKYFDNMSVVPKESIEIVAESIGISNLSPEVALALTPDVEYRVREIMQEAVKCMRHSKRTVLTSIDVDNALKLRNLEPIYGFAACDSLRFKRAVGHKDLFYIDDKDVELNNVIESPLAKATVDTSVVAHWLAVEGVQPAVAENLLTEEPHDGKKSDLKEEELPYDSKAPTKHVISRDLQLYFEKITGLVLNKSGSNLFREALRSLSVDSGIQPLLPYFTCFIADEVSKNLCNSQLLIALMRMVWCLLRNPQIHMAPYLHQLMPSIITCLVAKQLGKRLSDNHWELRDLAASLVSLICKRFGHTYHNIQPRVTKTLLHVFLDPSKLLPQHYGAVQGLADLGPDVVRQLILPNIEPYMQYLEMEKQKNETRRHEAWQVYRTLLHAAGKCMHGWLKVFPLSLYPPMCSTSKINAKINGQVVKTISNKRKASADNSVQQPALKKMAMDSALGAIPMNSMMVDMQGAASGLPTPLGGSNIGVARNFPNEMRVGRDGELGFKGSTALSIAWKEDLDAGSLLTSLFPLFGEDLFPFIPKPELSFFL 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5415548 5428424 + CcPI632755_10g004560.1 Cco10g0456 189414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0456 901 Gene3D Histone, subunit A 368 435 IPR009072 GO:0046982(InterPro)
Cco10g0456 901 FunFam syntaxin-51 isoform X2 170 232 - -
Cco10g0456 901 SMART tSNARE_6 163 230 IPR000727 -
Cco10g0456 901 Pfam SNARE domain 205 253 IPR000727 -
Cco10g0456 901 SUPERFAMILY Histone-fold 369 434 IPR009072 GO:0046982(InterPro)
Cco10g0456 901 Pfam TAF6 C-terminal HEAT repeat domain 532 714 IPR011442 GO:0006367(InterPro)
Cco10g0456 901 SUPERFAMILY ARM repeat 542 775 IPR016024 -
Cco10g0456 901 CDD TAF6C 533 745 IPR011442 GO:0006367(InterPro)
Cco10g0456 901 SUPERFAMILY SNARE fusion complex 159 230 - -
Cco10g0456 901 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 370 900 IPR037796 GO:0000124(InterPro)|GO:0003713(PANTHER)|GO:0005669(InterPro)|GO:0005669(PANTHER)|GO:0006367(InterPro)|GO:0016251(PANTHER)|GO:0016251(InterPro)|GO:0046695(InterPro)|GO:0051123(PANTHER)
Cco10g0456 901 SMART TAF_cls 370 436 IPR004823 -
Cco10g0456 901 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 168 230 IPR000727 -
Cco10g0456 901 Pfam TATA box binding protein associated factor (TAF) 369 434 IPR004823 -
Cco10g0456 901 Gene3D - 170 232 - -
Cco10g0456 901 FunFam Transcription initiation factor TFIID subunit 6 533 728 - -
Cco10g0456 901 CDD SNARE_Qc 171 228 - -
Cco10g0456 901 Gene3D - 532 733 IPR046344 GO:0006367(InterPro)
Cco10g0456 901 FunFam transcription initiation factor TFIID subunit 6 369 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0265 Cco-Chr2:2428841 Cco10g0456 Cco-Chr10:5415548 2.20E-159 dispersed
Cco06g0051 Cco-Chr6:472773 Cco10g0456 Cco-Chr10:5415548 7.70E-06 dispersed
Cco09g1113 Cco-Chr9:10680226 Cco10g0456 Cco-Chr10:5415548 1.90E-91 dispersed
Cco09g1508 Cco-Chr9:20781844 Cco10g0456 Cco-Chr10:5415548 6.10E-12 dispersed
Cco09g1509 Cco-Chr9:20791336 Cco10g0456 Cco-Chr10:5415548 2.80E-21 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0456 K03131 - csv:101204807 978.778