Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0474 ATGGAGCTCTTCACATCCAATTTCTCTTCAACCATTCTCAATCACTCTCCATGGCGCCCTTCTCTTTCTTCTCCTTCCTCAATTTCTGCTTCTTTCTCCAAAACCCCTTTGCTTCAATGGAGCAATCTTCGCTTTCTTCCTCCTCCATTTCACCTCCTTCACCCTCTCCAAATCTCCCCGACTTCCTGCCGATTTGCTTCTCCAGCTTCTTCGCCTTCTTCCGTCGATCTTGAACCTAAGATCGACAAGCTTCCTGCGGAGCTGGAGATTTCCGAGACCCAAGAGCCCAATTCCAGAGTTAGATTGAGTGTAGGAGTTCCACCAGCTGTTTGTGAGGATTGTCATAGCAGGGTCATAGCTGAGTTCATGAAGCAGGCCAAGATCCCAGGATTTCGTCCTGGAAAGAAAGTTCCAGAAAGTATTCTTGTAAGTTATGTAGGAAAGAACCATGTTCAGAAGGCCATTGTAGAATCAATTTTGAAGAGGACCCTTCCTCATGCCATGTCCTCAGTAGCAGGAAGGGCACTGAAAGACTCGGTTCGTATTGCCTCTAAATTTTCTGACTTAGAGCATACCCTTTCTTCTCAAGGCTCTCTCAGATATGACATTATTGTTGATGTTGCACCTGAAGTCAGATGGGTTCCTGAGAATGGATACAAAAACCTGAAGGTGGTTGTTGAAATAGACAGCGAAATAGATGCTCAAAAAACTTCCGAACAAGAATTAAAGCGCCGCCACAAGTCCCTTGGTGCATTAAGAATTGTGACTGACAGAGGATTACAGATTGGTGATGTTGCAGTAATTGATATATCAGCAATAACAATTGGTCAAGACGAATCTAGTGGTCAAAAGATTCCATCGGCAGAGAGCAAAGGTTATCGTTTTGATACGGAAGACAGTGATAAAATCCTTCCTGGGTTTCTTGATTCATTAATTGGCATTCAACGAGGTGAAACAAAGTCATTTCCCCTTGTGTTTCCAGAATCATGGAAACAAGAAGATCTCCGTGGTGTTCATGCTCAATTCACAGTTGAGTGCAAGGAACTATTCTACCGAGAATTACCTCAGTTGGATGACTCACTAGCTGATAAGCTTCTTCCCGGCTCTACAACCCTAGAACAGGTCAAGGAAGCGTTGCTACAAAGATGCCTTGAAGTGGAGCAGACAGCTAAAGATCAAGCAACGGACAATGCAATTCTTGACCAGCTTTGCAAGATGGTGGAAGTTGATATTCCTCAATCCATATTTGAGGAGCAAGGCAGGCAGCTATATGGAGCAAAACTATTGCAGATACAGACAAACATGAAATTAAATGAACAGCAGTTGGCTACTCTATCTAGTCCTAAGGCTGTGAAGGAGTACCTTGAAAATCAGAAAGACAACATTACGCATGTTATAAAACAGAATCTGGCAGTGGGAGATATATTTAAACGTGAAAATTTGCAGGTGGCCACAGAGGAACTCATGGAAGAGGTGGAAAATTCTATTGCTGAATTTAAACGTAGTAGTCAAGAATATGATGAAGACCGGGTGCAGGAACAGGTACAAGACATACTAGAGGGAGCAAAAGTGCTAGAATGGTTGAGAGAGCATGCAGTGATCGAGTACATAACCAGATGA 1620 43.21 MELFTSNFSSTILNHSPWRPSLSSPSSISASFSKTPLLQWSNLRFLPPPFHLLHPLQISPTSCRFASPASSPSSVDLEPKIDKLPAELEISETQEPNSRVRLSVGVPPAVCEDCHSRVIAEFMKQAKIPGFRPGKKVPESILVSYVGKNHVQKAIVESILKRTLPHAMSSVAGRALKDSVRIASKFSDLEHTLSSQGSLRYDIIVDVAPEVRWVPENGYKNLKVVVEIDSEIDAQKTSEQELKRRHKSLGALRIVTDRGLQIGDVAVIDISAITIGQDESSGQKIPSAESKGYRFDTEDSDKILPGFLDSLIGIQRGETKSFPLVFPESWKQEDLRGVHAQFTVECKELFYRELPQLDDSLADKLLPGSTTLEQVKEALLQRCLEVEQTAKDQATDNAILDQLCKMVEVDIPQSIFEEQGRQLYGAKLLQIQTNMKLNEQQLATLSSPKAVKEYLENQKDNITHVIKQNLAVGDIFKRENLQVATEELMEEVENSIAEFKRSSQEYDEDRVQEQVQDILEGAKVLEWLREHAVIEYITR 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5644616 5650638 - CcPI632755_10g004740.1 Cco10g0474 189432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0474 539 Coils Coil 478 509 - -
Cco10g0474 539 FunFam Trigger factor 254 355 - -
Cco10g0474 539 Hamap Trigger factor [tig]. 88 535 IPR005215 GO:0015031(InterPro)
Cco10g0474 539 SUPERFAMILY FKBP-like 256 358 - -
Cco10g0474 539 Gene3D - 218 533 IPR037041 GO:0006457(InterPro)|GO:0015031(InterPro)
Cco10g0474 539 FunFam Trigger factor 88 211 - -
Cco10g0474 539 NCBIfam trigger factor 99 528 IPR005215 GO:0015031(InterPro)
Cco10g0474 539 Gene3D - 86 210 IPR036611 GO:0006457(InterPro)|GO:0015031(InterPro)
Cco10g0474 539 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 357 536 IPR027304 -
Cco10g0474 539 FunFam Chloroplast trigger factor 335 534 - -
Cco10g0474 539 Pfam Bacterial trigger factor protein (TF) C-terminus 371 528 IPR008880 GO:0006457(InterPro)|GO:0015031(InterPro)
Cco10g0474 539 SUPERFAMILY Trigger factor ribosome-binding domain 89 227 IPR036611 GO:0006457(InterPro)|GO:0015031(InterPro)
Cco10g0474 539 Gene3D - 248 355 IPR046357 GO:0003755(InterPro)
Cco10g0474 539 Pfam Bacterial trigger factor protein (TF) 90 235 IPR008881 GO:0006457(InterPro)|GO:0015031(InterPro)
Cco10g0474 539 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 88 534 IPR005215 GO:0003755(PANTHER)|GO:0015031(InterPro)|GO:0043022(PANTHER)|GO:0043335(PANTHER)|GO:0044183(PANTHER)|GO:0051083(PANTHER)|GO:0061077(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0474 K03545 - - csv:101219032 932.554
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g573 . . . . . . Bma10g00578 . . Cmo06g00892 . . . . . . . . . . . . . . Cla10g00479 Cam10g0466 Cec10g0486 Cco10g0474 Clacu10g0486 Cmu10g1314 Cre10g0718 . . . Cone15ag1194 . Csa03g00480 . Cme06g02841 . . Bda05g00697 . . Bpe03g00772 . . Sed08g2980 . . . . . . . . Bhi11g00581 Tan01g1746 Cmetu06g1014 . Hepe06g0018 . . . . . . . . . Lsi05g00567 . Chy06g01842 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011555 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 30