Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0478 ATGAGGAGAGGGAGAGGGGCGGCGGTGCCGGTACGGGCGGCGCGTGAACCACCTGCCACCGGATCGGAACGGAGATACAGAGGAGTCCGTAAAAGGCCATGGGGAAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACAAGAGTTTGGTTAGGGACCTTCGATTCCGCCGATGACGCCGCCCGTGCTTACGATAACGCCGCCATAACCCTCCGAGGCCCTAAAGCTAAAACCAATTTCCCTCTTCCTAATCCCACTTCGTTTTTCGATTACCCTCCTTTCCCTCCTCATCCCGTCAACGCTCCAGATCCCTTCCCCGATTCCCGATTTCAGATTAACCCTCATAGACCTACTTCCAGCAGTTTGAGCTCCACCGTCGAATCCTTCAGCGGTCCTCGCCCTCCCTCCGCCGCCGCTACTACGACCACTTCCCACTCCCGCCGTTACCCACGTACACCGCCTCTCCTCCCTGAAGATTGCCATAGCGATTGTGATTCTTCCTCTTCCGTTATCGACGATGGCGACGACATCGCTTCCTCCTCCATCCTTCCTCGGAAACCACCTCTGCCTTTCGATCTCAACATTCCACCTTCCGATCTTCTTGATTTTACCGCCGATGATCTTCGATGTACCGCTTTGTGCCTCTGA 651 56.07 MRRGRGAAVPVRAAREPPATGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSADDAARAYDNAAITLRGPKAKTNFPLPNPTSFFDYPPFPPHPVNAPDPFPDSRFQINPHRPTSSSLSSTVESFSGPRPPSAAATTTTSHSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSILPRKPPLPFDLNIPPSDLLDFTADDLRCTALCL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5710605 5711255 - CcPI632755_10g004780.1 Cco10g0478 189436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0478 216 MobiDBLite consensus disorder prediction 95 169 - -
Cco10g0478 216 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Cco10g0478 216 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0478 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 174 - -
Cco10g0478 216 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0478 216 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677(InterPro)
Cco10g0478 216 MobiDBLite consensus disorder prediction 1 28 - -
Cco10g0478 216 SMART rav1_2 25 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0478 216 CDD AP2 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0478 216 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0478 216 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0478 216 MobiDBLite consensus disorder prediction 113 150 - -
Cco10g0478 216 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0490 Cco-Chr8:12345056 Cco10g0478 Cco-Chr10:5710605 3.00E-18 dispersed
Cco09g0305 Cco-Chr9:2663927 Cco10g0478 Cco-Chr10:5710605 4.40E-19 dispersed
Cco10g0478 Cco-Chr10:5710605 Cco11g1835 Cco-Chr11:31015923 1.00E-22 dispersed
Cco10g0478 Cco-Chr10:5710605 Cco02g1940 Cco-Chr2:32350711 1.50E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60071 PF00847 AP2 3.40E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0478 K09286 - csv:101219993 291.582