Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0485 ATGGTGAGTTTAGACAAGTTTTCCTCGGTTGTTAACTCATGTAGTGTGATTGTTGGGGCGCATGGGGCCAGTCTGACAAACGAGGTGTTTTTGGCGGCGGGCGCGGTGGTCGTGCAGGTGGTTCCGTTGGGGCTTGAATGGCCTTCAACCTTTTTGTTCGGGAAGCCAGGGGCTGAGATGGAGCTTGAGTATTTGGAGTATAAGATTGAGGCAAAGGAGAGTTGTTTATGGGATAGGGAAAATCATACGGTTATTAGAGATCCTCAGTCTATGTTTGCCAAGGCTTACTTTGCTAGTAGAGCTATCTATATAGATGGGCAGAATTTGAAGATAAATTTGACTAGGTTTCGAGATACTATGATTCAAGTCAATAAATTGATTCGACAAAAGAAGAAGTTGGTGAATTGA 408 43.87 MVSLDKFSSVVNSCSVIVGAHGASLTNEVFLAAGAVVVQVVPLGLEWPSTFLFGKPGAEMELEYLEYKIEAKESCLWDRENHTVIRDPQSMFAKAYFASRAIYIDGQNLKINLTRFRDTMIQVNKLIRQKKKLVN 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5784967 5785374 + CcPI632755_10g004850.1 Cco10g0485 189443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0485 135 PANTHER GLYCOSYLTRANSFERASE 3 123 IPR007657 GO:0016757(InterPro)|GO:0016757(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0485 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1667 Cco-Chr1:29431402 Cco10g0485 Cco-Chr10:5784967 5.40E-24 dispersed
Cco04g0489 Cco-Chr4:15842325 Cco10g0485 Cco-Chr10:5784967 2.60E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g552 . . . . . . . . . Cmo06g00897 . . . . . . . . . . . . . . Cla10g00490 Cam10g0480 Cec10g0499 Cco10g0485 Clacu10g0499 Cmu10g1326 Cre10g0731 . . . . . Csa03g00494 . Cme06g02858 . . . . . . . . Sed14g0140 . . . . . . . . Bhi11g00593 Tan01g1728 Cmetu06g2813 . . . . . . . . . . . Lsi05g00579 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013386 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 2 2 1 0 1 1 0 2 2 1 26