Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0486 ATGGTCTCCCACAGACCCTTATCCTTCAGCTTCTTCTTCCTCTTCTTCTTCCCAATTTTGTTTAGGGTTTCAAATTCTTCCTTAGTTCCAGCAATCTACGTGTTTGGAGACTCATTAGTGGATGTTGGAAACAACAACCACTTGAAGCTCTCACTAGCCAAAGCCAACTTTCCCCACAATGGACTTGATTTTCCTACTAAGAAGCCCACCGGAAGGTTCTCTAATGGCAAGAATGCTGCCGATTATATTGCTGAGAAGGTGGGGCTGCCGACTTCGCCGCCATATTTGTCTCTCATATCCAAGTTTAGAAAGATTATCAATACGACACCGTTTAAGACAGGCGTCAGCTTCGCTTCTGGAGGAGCCGGAATTTTTAATGAAACAAATAATCTTTTTAAACAATCGGTGGCAATGGACCAACAAATAGTGTTCTATTCAACGGTGTACAAAAATCTGGTAGGAGAGCTGGGATCGTCTGGAGCGGCAGCACACCTATCCAAATCTCTATTTACGGTTGTGATTGGAAGTAACGACATCTTCGGCTATCATCAGTCGTCCGATCTGCGTAATAAGTACTCCCCACAGCAATACTTGGACTTGATGGCCTCCACTCTGGAGTCGCAGCTTAAGCGATTACATGGGTATGGGGCAAGAAAATATGTGGTGGGTGGAATTGGATTAGTGGGGTGTGCACCATCACAAAGGAAGAGAAGCAAAACAGGGGAATGCGATGAGGAAGTCAATAATTGGGCCTCAACTTACAACAGTGCTCTAAAGTCAATGCTTCTAAGACTAAAATTGGAGCTCAAAGACGTTTCATTCTCCTACTTTGATGTATATCAAGTCATGTCCAACTTCGTTCGTACACCATCTTCTTATGGATTGGCAGAGATTAAAAGTGCTTGTTGTGGGCTTGGGAATTTGAAGGCAGATGTTCCTTGTTTACCAATTGCAACATTTTGCTCAAATAGAAGCAACCATCTCTTTTGGGATCTCTATCATCCTACACAACAAGCCCATCAAATCCTCGAACCTCCGCTCCACCGTCCGCCGTCCGTTCACCTTGCCGTCGACCCAGTCGCCACAGCCGTCACGTCCACGCACCACGATCGAGGTTCCAATCGTCTCTCTCGCGTCTTACGCCCAATTCGTTCTCAGTCGATCGGCGACGCTGTTGAGCATCGCACATCCTTGATCCAGTCAGCCCAATGTCGTTTGGCACCACTAGCACTAAGGGTCACCGGAATTTCAAAATTTGGCTGCCGCCGCCACCTCCCCTTGTCGTTGCCGCCGTCTTCCACCCGATCACCGTCGCCGGTTGTCGCTGTTGTCGCTGTTGCTTGTTCTCTTAGTCGTAAGAGTTTTTTTTTTTTTGTGTCGTTGCGGCCGCCGTCGGAGTCTCAAGTCTGTCCTACTTTCCGGTTCAGGAAGATGGAATCCTCCGTGATAGCAGCTGAGCGCATTCTTTCGTATAATTTCAAGAACAAGAAGCTCTTAGAAGAAGCACTCACCCACTCCTCCTACTTCGACTCTGCCTCCTATGAGCGCCTCGAGTTTATCGGCGATTCAGCTATTGGCCTCGCTATTACCAATTATTTTTTTCTTGCTTATCCGGACCTCCATCAAGGCCAACTATCTTTACTTAGGGCTGCTAACATTAGCACCGAGAAGCTTGCTCGTGTTGCAGTCCGCCATGGATTGTATAACTATGTTAGGCGCAACGCCGCCGCTCTCGATGACAAGGTTAGAGAGTTCGTCGATTCCGTCGCCCTAGAACATAACTCAGTTCCGTATGGTGGGTTGGTGAAGGCTCCTAAAGTTCTTGCTGACATTGTGGAGTCTGTAGCTGGTGCTGTCTATGTAGATGTTAATTTTGATCTTCAAAGACTATGGGTGATAATTAGGGGTTTGTTAGAGCCTATCTATACTCTTGAAGACTTACAAGTAGAGCCCCAACCTGTAACCGTGCTCTTTGAAGTTTGCCAAAAAAATGGGAAGCAGGTAGATATCAAGAATTGGAAAAACGGTTCCACGAACGTTGCAAGTGTTTATGTCGACGGTAGTTTTGTTGCTTCCGGCACCTCAATGCAAAAAGAAATTGCAAGGCTTAATGCTGCCAGAGAAGCTCTCATTAAATTGTCGGATTTCATGGACACCAGAATTAGAACGGTTGTAACTATTGATGGTATCGATAAATCGTTTGAGATTGAAGGGGCAAAGCATAAGCTACATGATTTTTGTTGCAAGAAAAAGTGGCCGAAACCAAATTACAGTACTGAGAAAGATTTAGGACCTTCACATGAAAGGAGATTTGTTTGCTCTGTTAAGATTTCCACTTCTTCCGGTACGCTCTATATGATGGGAGATGAGAAGTCAAGAGTAAAGGATGCAGAGAATTCTGCAGCCTCTTTGATGATTCGTGCTTTACAGGAAAGAAACTATCTCTAA 2448 45.55 MVSHRPLSFSFFFLFFFPILFRVSNSSLVPAIYVFGDSLVDVGNNNHLKLSLAKANFPHNGLDFPTKKPTGRFSNGKNAADYIAEKVGLPTSPPYLSLISKFRKIINTTPFKTGVSFASGGAGIFNETNNLFKQSVAMDQQIVFYSTVYKNLVGELGSSGAAAHLSKSLFTVVIGSNDIFGYHQSSDLRNKYSPQQYLDLMASTLESQLKRLHGYGARKYVVGGIGLVGCAPSQRKRSKTGECDEEVNNWASTYNSALKSMLLRLKLELKDVSFSYFDVYQVMSNFVRTPSSYGLAEIKSACCGLGNLKADVPCLPIATFCSNRSNHLFWDLYHPTQQAHQILEPPLHRPPSVHLAVDPVATAVTSTHHDRGSNRLSRVLRPIRSQSIGDAVEHRTSLIQSAQCRLAPLALRVTGISKFGCRRHLPLSLPPSSTRSPSPVVAVVAVACSLSRKSFFFFVSLRPPSESQVCPTFRFRKMESSVIAAERILSYNFKNKKLLEEALTHSSYFDSASYERLEFIGDSAIGLAITNYFFLAYPDLHQGQLSLLRAANISTEKLARVAVRHGLYNYVRRNAAALDDKVREFVDSVALEHNSVPYGGLVKAPKVLADIVESVAGAVYVDVNFDLQRLWVIIRGLLEPIYTLEDLQVEPQPVTVLFEVCQKNGKQVDIKNWKNGSTNVASVYVDGSFVASGTSMQKEIARLNAAREALIKLSDFMDTRIRTVVTIDGIDKSFEIEGAKHKLHDFCCKKKWPKPNYSTEKDLGPSHERRFVCSVKISTSSGTLYMMGDEKSRVKDAENSAASLMIRALQERNYL 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5785674 5805487 - CcPI632755_10g004860.1 Cco10g0486 189444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0486 815 Gene3D - 737 812 - -
Cco10g0486 815 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 738 811 IPR014720 -
Cco10g0486 815 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 18 343 IPR051058 -
Cco10g0486 815 Pfam Ribonuclease III domain 515 622 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cco10g0486 815 SMART DRBM_3 739 810 IPR014720 -
Cco10g0486 815 SMART DRBM_3 653 714 IPR014720 -
Cco10g0486 815 SUPERFAMILY RNase III domain-like 481 643 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cco10g0486 815 SUPERFAMILY dsRNA-binding domain-like 738 813 - -
Cco10g0486 815 Pfam Double-stranded RNA binding motif 739 809 IPR014720 -
Cco10g0486 815 Pfam Double-stranded RNA binding motif 653 713 IPR014720 -
Cco10g0486 815 SUPERFAMILY dsRNA-binding domain-like 606 713 - -
Cco10g0486 815 CDD SGNH_plant_lipase_like 30 343 IPR035669 -
Cco10g0486 815 ProSiteProfiles Ribonuclease III family domain profile. 482 624 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cco10g0486 815 Gene3D SGNH hydrolase 20 344 IPR036514 -
Cco10g0486 815 SMART riboneu5 497 647 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cco10g0486 815 Gene3D Ribonuclease III domain 473 644 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cco10g0486 815 Gene3D - 649 719 - -
Cco10g0486 815 CDD RIBOc 497 647 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cco10g0486 815 Pfam GDSL-like Lipase/Acylhydrolase 32 342 IPR001087 GO:0016788(InterPro)
Cco10g0486 815 FunFam Endoribonuclease dicer-like 1 477 645 - -
Cco10g0486 815 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 652 715 IPR014720 -
Cco10g0486 815 SUPERFAMILY SGNH hydrolase 162 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0486 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0486 Cco-Chr10:5785674 Cco11g0870 Cco-Chr11:10942642 7.50E-58 dispersed
Cco10g0486 Cco-Chr10:5785674 Cco10g0489 Cco-Chr10:5833622 1.50E-79 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42