Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0489 ATGGCTTCAAGCTTTCATGGCTGCTGCTGCTGCTTCTTCTTCTTCACTTTGCTTTGTAATTATTTGACATTTTCGGAGGCTGCTTTGGTTCCTGCCATGTATGTGTTTGGAGACTCTTTAGTAGACGTTGGGAACAATAATTATCTCAATTTTTCTGCAGTCAAAGCTAACTTTTATCCTAATGGCATTGACTTTCCCACCGGAAAACCCACCGGAAGGTTCTGTAATGGCAAGAATCCTGCTGATTTTCTTGCTGAGAAGGTGGGGTTGGCTAGTGCGCCATCGTATCTTTCAGTTAGTAAGAATAGAAGTCATACATACAACATCAACACAGGCATCAACTTTGCTTCTGGAGGAGCTACAATCATTCCACAATCAAATCAAATAATTGTAAGCGGTCGTTTACTTGCGGTCATGGATCACTATTCACTAGTAAGTGACTATATACATGTGGTGAATGATCTCTATGCTATAGGACCATTATCGCTTACTTGGATTACATCAATATCACTGTCTATGCAAGTGGTGTACTACAATTCTATATATGAAGCGTTGGTGAAAGATTTGGGAATGAATAAAGCAAAGGCACATGCATCAAAATCTCTATATTTGATTGAAATTGGAAGCAACGACATATTTGCTTACTTTGCATCATCCAACCTTAGCAAAATCTACACTCCTCCACAGTATTTGGACTTAATGTCTCACCATTTTGAGAACCAACTAAAGCGATTGTACAAAAATGGAGCTCGTAAATTGGTGGTAATTGGTGTGGGGGTACTTGGATGCACCCCAGCAATGAGATACCAAAACATTAGTGAAGGATGCAATTCTGAAATGAATTGGTGGGCTTTTAAGTTCAATCAACTTCTCACATCAATGCTTAAGAGACTCAAAGATGAGTTATTTGGCTTTCATTTTTCCTACTTTGATGGCTTCTCTATTATGCTTAGCTCCATTCACAATCCCACCACTTTTGGATTTAGTAAAGTTAAAGCAGCATGTTGTGGGTCTGGTAGACTAAAGGCTGAAGTGGGTTGCATTCCAAAAATCATCGGAACGAGTTTAGCGGCTCGTAATCTCAATGACAATGTGTTAGAATGGGTGAAGAAGGACCATCATCGTTTTCTCCGTGCTGTTATTTACGTCTCCAATCTAGACCGTTCTGTTAGGTTTTACACGCAAGGCTTTGGAATGAAACTTTTGAAAAGAAGGAACTTCCCAGATCGTCAATACAGCGACGCCCTCATTGGGTTTGGGCCTCAAAATACTCACTTTTTGTTAGAACTAAGACATCGACATGATTCGAATGATGTATTTATTGGGACAGAGTTTGGACATTTTGGGATTGCCACTAAAGATGTCTACAAATATGTGGAGAAAGCTCGAGCAAATGGTGCATTGGTGATCCACAAGCCCCAAAAAGTTAACCAAACCATCGTTGCCTTTGTGCAAGATCGTGATGGCTATAAGTTTAAGCTCATTCAAAGGACTTCTTTAACTGATCCTCTTGTTCAAATCATGCTTCATGTACAAGATTTGAATCGTTCCCTCAACTTCTATACAAAGATTGTTTCGGGGACTTTGGGTTATGGAATAAACCAAAGTAAAACAACAGTGTTGCAATTGGAGAAAAGAAAAAACATCCCTCGTGATGATGGACGAGATGGCTATTCAATGGTGTATATTGGTACTGACGACGTAAACAAGAGTGCTGAAGCTGCTATGTTGGTAATGAAAGAGCTTGGTGGTAACATAGTAATCGAGCCGGTTCTTTTGTCCAATATCAATGTCAAATTAACTTGCTTTAGTGATCCAGATAATTGGATAACGATTATGGTTGACAATAAAGATTATCAAAGAGGAACACTATAA 1875 39.25 MASSFHGCCCCFFFFTLLCNYLTFSEAALVPAMYVFGDSLVDVGNNNYLNFSAVKANFYPNGIDFPTGKPTGRFCNGKNPADFLAEKVGLASAPSYLSVSKNRSHTYNINTGINFASGGATIIPQSNQIIVSGRLLAVMDHYSLVSDYIHVVNDLYAIGPLSLTWITSISLSMQVVYYNSIYEALVKDLGMNKAKAHASKSLYLIEIGSNDIFAYFASSNLSKIYTPPQYLDLMSHHFENQLKRLYKNGARKLVVIGVGVLGCTPAMRYQNISEGCNSEMNWWAFKFNQLLTSMLKRLKDELFGFHFSYFDGFSIMLSSIHNPTTFGFSKVKAACCGSGRLKAEVGCIPKIIGTSLAARNLNDNVLEWVKKDHHRFLRAVIYVSNLDRSVRFYTQGFGMKLLKRRNFPDRQYSDALIGFGPQNTHFLLELRHRHDSNDVFIGTEFGHFGIATKDVYKYVEKARANGALVIHKPQKVNQTIVAFVQDRDGYKFKLIQRTSLTDPLVQIMLHVQDLNRSLNFYTKIVSGTLGYGINQSKTTVLQLEKRKNIPRDDGRDGYSMVYIGTDDVNKSAEAAMLVMKELGGNIVIEPVLLSNINVKLTCFSDPDNWITIMVDNKDYQRGTL 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5833622 5854477 + CcPI632755_10g004890.1 Cco10g0489 189447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0489 624 Gene3D - 500 623 IPR029068 -
Cco10g0489 624 Pfam GDSL-like Lipase/Acylhydrolase 34 340 IPR001087 GO:0016788(InterPro)
Cco10g0489 624 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 377 493 IPR004360 -
Cco10g0489 624 CDD SGNH_plant_lipase_like 31 349 IPR035669 -
Cco10g0489 624 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 166 355 IPR051058 -
Cco10g0489 624 Gene3D - 355 499 IPR029068 -
Cco10g0489 624 Gene3D SGNH hydrolase 20 354 IPR036514 -
Cco10g0489 624 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 505 611 IPR029068 -
Cco10g0489 624 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 375 497 IPR037523 -
Cco10g0489 624 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 376 524 IPR029068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0489 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1002 Cco-Chr6:13686867 Cco10g0489 Cco-Chr10:5833622 1.80E-59 dispersed
Cco10g0489 Cco-Chr10:5833622 Cco11g0251 Cco-Chr11:2440439 1.30E-57 dispersed
Cco10g0486 Cco-Chr10:5785674 Cco10g0489 Cco-Chr10:5833622 1.50E-79 proximal
Cco10g0487 Cco-Chr10:5817831 Cco10g0489 Cco-Chr10:5833622 3.20E-110 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g530 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00494 Cam10g0486 Cec10g0504 Cco10g0489 Clacu10g0505 Cmu10g1332 Cre10g0735 . . . . . Csa03g00500 . Cme06g02233 . . . . . . . . Sed04g0721 . . . Cma16g00898 . Car16g00874 . . Bhi11g00600 Tan01g1721 Cmetu06g0380 . Hepe07g1266 . . . . . . . . . . . Chy06g01826 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008029 0 2 0 0 0 2 1 2 2 1 2 2 1 1 2 1 2 0 1 2 2 1 2 0 2 1 1 2 1 0 36