Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0500 ATGTTGAATAGATGCGTGATGCTGAGCCTTCTCATTCTTCTCAAGCTTTCTATATTCGCATTCTGCTTTGACTTCAGCATCAGCTTCTTGGGTGCCTTCAGATACCACCAAGCAAATTACATGGTTGATCTAGACATCCAGATTCCAAGCACTTTCGATCCCTTTGCTGACGCCAAAGACTCGGATGCCCCCGGAACCAAAGAATACGTCCATATAAGGGTCCAACAGAGGAATGGAAAGAAGTGTCTAACGACAGTTCAAGGGCTTAAGAAAGAGTTCAGCTATGATAAGATCCTTAAGGACCTGAAGAAGGACTTCTGTTGCAACGGGAATGTTGTGCAGGATAAAGAGCTGGGGAAGATAATCCAACTTCAAGGCGATCAGCGGAAGAACGTCTCTCAGTTTCTTGTTCAGGCTGGCCTCGTCAAGAAGGATCAAATCAAGATACATGGTTTTTGA 459 44.66 MLNRCVMLSLLILLKLSIFAFCFDFSISFLGAFRYHQANYMVDLDIQIPSTFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6002603 6006057 - CcPI632755_10g005000.1 Cco10g0500 189458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0500 152 Pfam Translation initiation factor SUI1 67 141 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco10g0500 152 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 41 152 - GO:0003723(PANTHER)
Cco10g0500 152 NCBIfam translation initiation factor SUI1 45 152 IPR005874 GO:0003743(InterPro)
Cco10g0500 152 ProSiteProfiles Translation initiation factor SUI1 family profile. 70 140 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco10g0500 152 Gene3D - 31 152 - -
Cco10g0500 152 FunFam Eukaryotic translation initiation factor SUI1 42 152 - -
Cco10g0500 152 CDD eIF1_SUI1 68 151 IPR005874 GO:0003743(InterPro)
Cco10g0500 152 SUPERFAMILY eIF1-like 39 152 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0183 Cco-Chr2:1764332 Cco10g0500 Cco-Chr10:6002603 6.20E-45 dispersed
Cco02g0184 Cco-Chr2:1769830 Cco10g0500 Cco-Chr10:6002603 1.00E-40 dispersed
Cco09g1086 Cco-Chr9:10359758 Cco10g0500 Cco-Chr10:6002603 2.90E-57 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0500 K03113 - csv:101214921 227.254