Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0501 | ATGACCCACTTTATCGAACCCAAATTCCACCAAACCCCATTTCCCCTTCTCCGCCGCACTCCCAAATCTCCACCACCCATCTCAATCCGATGCGGCAGTGCCACCCGCGAGCTCCGATCCCGACTAGACTCCATCAAGAACACCCAGAAGCTCACCGAAGCCATGAAACTCGTCGCCGCCGCTAAAGTCCGACGAGCCCAAGAAGCCGTAATCAACAGCCGCCCCTTCTCCCAATCCCTCGCCCAATTTCTCCATTTCATCATCCAACAAATCCAACGAGACGACATCGATTTCCCCTTTATAAACCCTAGACCCGTCAGGAAAGTCGCCGTCGTCGTCTTCACCGGCGATCGAGGCCTCTGCGGGGGCTTCAACTCTTCGGTAATAAAAAAAGCCGAGACCCGATTGACCGAATTGAAAAACCTCGATCTGGGTCACACCCTAATCAGCGTCGGGAAAAAGGGCAATTCGCATTTCCGCCGCCGGTCCGATGTTGAAGTCGATCGGTTCATCACCGGCTGCGGCGGCGTTTCAGTACCCACTGCAAAAGAAGCTCAAGCCATAGCAGATATTGTGTTTTCTCTGTTCATTAGCGAAGAAGTGGACAAAGTGGAAGTAATTTACACAAAATTCGTTTCGTTGCTGAAATCCGAGCCTGTGATTGAGACATTGCTGCCATTGTTGGGGGAAGGGGAAGCCATGGGAGATGGAGGGTTTAGATTGACGACGGCGGAGGGGAAATTGAAGGTGGAGAGAGAGGTTAAAAGGGGGAAATTAGGGGAAATTTCGCCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTTTGTATTTGAACAGCCAGATTTTGAGGGCTTTGCAGGAATCTCTGGCGAGTGAAGTAGCGGCGAGGATGAATGCAATGAGTAATGCTTCTGAGAATGCAATGGAGTTGAAGAAATCTGTTTCGGTTGCTTATAATCGAGAGAGACAGGCCAAGATTACTGGGGAGATTTTGGAAATCGTTGCTGGAGCTGAGGCTCTTGAGGGATTTTGA | 1053 | 50.24 | MTHFIEPKFHQTPFPLLRRTPKSPPPISIRCGSATRELRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAQFLHFIIQQIQRDDIDFPFINPRPVRKVAVVVFTGDRGLCGGFNSSVIKKAETRLTELKNLDLGHTLISVGKKGNSHFRRRSDVEVDRFITGCGGVSVPTAKEAQAIADIVFSLFISEEVDKVEVIYTKFVSLLKSEPVIETLLPLLGEGEAMGDGGFRLTTAEGKLKVEREVKRGKLGEISPLLEFEQDPVQILDGMMALYLNSQILRALQESLASEVAARMNAMSNASENAMELKKSVSVAYNRERQAKITGEILEIVAGAEALEGF | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6012963 | 6014015 | - | CcPI632755_10g005010.1 | Cco10g0501 | 189459 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0501 | 350 | PRINTS | ATP synthase gamma subunit signature | 106 | 125 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco10g0501 | 350 | PRINTS | ATP synthase gamma subunit signature | 325 | 346 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco10g0501 | 350 | PRINTS | ATP synthase gamma subunit signature | 202 | 219 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco10g0501 | 350 | PRINTS | ATP synthase gamma subunit signature | 294 | 313 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco10g0501 | 350 | CDD | F1-ATPase_gamma | 35 | 344 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco10g0501 | 350 | FunFam | ATP synthase gamma chain | 99 | 228 | - | - | |
Cco10g0501 | 350 | FunFam | ATP synthase gamma chain, chloroplastic | 244 | 347 | - | - | |
Cco10g0501 | 350 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 33 | 105 | - | - | |
Cco10g0501 | 350 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 241 | 347 | - | - | |
Cco10g0501 | 350 | FunFam | ATP synthase gamma chain, chloroplastic | 33 | 100 | - | - | |
Cco10g0501 | 350 | NCBIfam | ATP synthase F1 subunit gamma | 35 | 347 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco10g0501 | 350 | Gene3D | - | 106 | 234 | - | - | |
Cco10g0501 | 350 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 29 | 347 | IPR000131 | GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER) | |
Cco10g0501 | 350 | Pfam | ATP synthase | 35 | 347 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco10g0501 | 350 | ProSitePatterns | ATP synthase gamma subunit signature. | 333 | 346 | IPR023632 | - | |
Cco10g0501 | 350 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 35 | 347 | IPR035968 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco10g0501 | 350 | Hamap | ATP synthase gamma chain [atpG]. | 32 | 347 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0463 | Cco-Chr3:4915595 | Cco10g0501 | Cco-Chr10:6012963 | 2.20E-105 | dispersed | |
Cco01g1771 | Cco-Chr1:30420665 | Cco10g0501 | Cco-Chr10:6012963 | 1.30E-24 | transposed | |
Cco10g0501 | Cco-Chr10:6012963 | Cco04g1981 | Cco-Chr4:34023254 | 3.90E-104 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0501 | K02115 | - | csv:101214682 | 608.986 |