Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0501 ATGACCCACTTTATCGAACCCAAATTCCACCAAACCCCATTTCCCCTTCTCCGCCGCACTCCCAAATCTCCACCACCCATCTCAATCCGATGCGGCAGTGCCACCCGCGAGCTCCGATCCCGACTAGACTCCATCAAGAACACCCAGAAGCTCACCGAAGCCATGAAACTCGTCGCCGCCGCTAAAGTCCGACGAGCCCAAGAAGCCGTAATCAACAGCCGCCCCTTCTCCCAATCCCTCGCCCAATTTCTCCATTTCATCATCCAACAAATCCAACGAGACGACATCGATTTCCCCTTTATAAACCCTAGACCCGTCAGGAAAGTCGCCGTCGTCGTCTTCACCGGCGATCGAGGCCTCTGCGGGGGCTTCAACTCTTCGGTAATAAAAAAAGCCGAGACCCGATTGACCGAATTGAAAAACCTCGATCTGGGTCACACCCTAATCAGCGTCGGGAAAAAGGGCAATTCGCATTTCCGCCGCCGGTCCGATGTTGAAGTCGATCGGTTCATCACCGGCTGCGGCGGCGTTTCAGTACCCACTGCAAAAGAAGCTCAAGCCATAGCAGATATTGTGTTTTCTCTGTTCATTAGCGAAGAAGTGGACAAAGTGGAAGTAATTTACACAAAATTCGTTTCGTTGCTGAAATCCGAGCCTGTGATTGAGACATTGCTGCCATTGTTGGGGGAAGGGGAAGCCATGGGAGATGGAGGGTTTAGATTGACGACGGCGGAGGGGAAATTGAAGGTGGAGAGAGAGGTTAAAAGGGGGAAATTAGGGGAAATTTCGCCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTTTGTATTTGAACAGCCAGATTTTGAGGGCTTTGCAGGAATCTCTGGCGAGTGAAGTAGCGGCGAGGATGAATGCAATGAGTAATGCTTCTGAGAATGCAATGGAGTTGAAGAAATCTGTTTCGGTTGCTTATAATCGAGAGAGACAGGCCAAGATTACTGGGGAGATTTTGGAAATCGTTGCTGGAGCTGAGGCTCTTGAGGGATTTTGA 1053 50.24 MTHFIEPKFHQTPFPLLRRTPKSPPPISIRCGSATRELRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAQFLHFIIQQIQRDDIDFPFINPRPVRKVAVVVFTGDRGLCGGFNSSVIKKAETRLTELKNLDLGHTLISVGKKGNSHFRRRSDVEVDRFITGCGGVSVPTAKEAQAIADIVFSLFISEEVDKVEVIYTKFVSLLKSEPVIETLLPLLGEGEAMGDGGFRLTTAEGKLKVEREVKRGKLGEISPLLEFEQDPVQILDGMMALYLNSQILRALQESLASEVAARMNAMSNASENAMELKKSVSVAYNRERQAKITGEILEIVAGAEALEGF 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6012963 6014015 - CcPI632755_10g005010.1 Cco10g0501 189459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0501 350 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco10g0501 350 PRINTS ATP synthase gamma subunit signature 325 346 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco10g0501 350 PRINTS ATP synthase gamma subunit signature 202 219 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco10g0501 350 PRINTS ATP synthase gamma subunit signature 294 313 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco10g0501 350 CDD F1-ATPase_gamma 35 344 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco10g0501 350 FunFam ATP synthase gamma chain 99 228 - -
Cco10g0501 350 FunFam ATP synthase gamma chain, chloroplastic 244 347 - -
Cco10g0501 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 33 105 - -
Cco10g0501 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 241 347 - -
Cco10g0501 350 FunFam ATP synthase gamma chain, chloroplastic 33 100 - -
Cco10g0501 350 NCBIfam ATP synthase F1 subunit gamma 35 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco10g0501 350 Gene3D - 106 234 - -
Cco10g0501 350 PANTHER ATP SYNTHASE GAMMA CHAIN 29 347 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Cco10g0501 350 Pfam ATP synthase 35 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco10g0501 350 ProSitePatterns ATP synthase gamma subunit signature. 333 346 IPR023632 -
Cco10g0501 350 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 35 347 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco10g0501 350 Hamap ATP synthase gamma chain [atpG]. 32 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0463 Cco-Chr3:4915595 Cco10g0501 Cco-Chr10:6012963 2.20E-105 dispersed
Cco01g1771 Cco-Chr1:30420665 Cco10g0501 Cco-Chr10:6012963 1.30E-24 transposed
Cco10g0501 Cco-Chr10:6012963 Cco04g1981 Cco-Chr4:34023254 3.90E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0501 K02115 - csv:101214682 608.986