Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0511 ATGAAGCAGAAATTCAAATCCAAGAAGTCTGGCAAGCAGAAGCGACTATCCGAAATTGAAGAAATTGAGCTCTTGAATTCATGGATTGAATCACAGAAACCTGACTCAGGCTCCAATCCTATGTCGCTCCCTCCGCCGCCCGCGAATGCCACCGTTGGCCGTATCGATGCCGATACCTACTCTCGTTACGCTGGAGCGACGAGGTTTGACCAGTTGCCGATTTCGAGCAAGACCAAAGATGGGTTGCGCAAAGCTGAGTTCGTTGACATGACTGACATACAGAAGGCTTCACTGCCTCACGCGCTTTGTGGTCGAGATATTCTTGGTGCAGCTAAAACTGGTTCAGGAAAGACGCTAGCGTTTCTCATACCTGTTCTTGAAAAATTGTATAGAGAGAGATGGGGTCCTGAGGCTGGAGTAGGGAGTATAATAGTATCTCCCACAAGAGAATTAGGAGCTCAGCTGTTTGATGTATTGAAAGCTGTAGGAAGATTTCATAATTTCAGTGCTGGCCTTTTAATTGGTGGTCGTAAAGATATTAACACTGAGAAGGAGCACGTGAATGAGTTGAACATTCTTGTTTGCACTCCTGGTCGACTCCTTCAGCATATGGATGAGACTCCAAATTTTGATTGTTCACAGCTTCAGGTTTTAGTCCTTGATGAAGCAGATCGTATTCTTGATGTTGGATTTAAGAAGACTTTAAATGCTATCGTCTCACAGCTACCTAAGCGTAGACAAACCTTTCTGTTCTCAGCAACTCAAACGAAGTCTGTTCAGGATCTTGCAAGACTCAGTTTGAAAGATCCTGAGTACCTTAGTGTCCATGCAGAATCTGTGACTGCCACACCCAATAGTCTACAGCAAACGGCTATGGTTGTTCCTCTCGAGCAGAAGCTGGACATGTTATGGAGCTTTATAAAGGCACATCTTAATTCTAAGATTCTTGTGTTTCTCTCTAGCTGTAAGCAGGTGAAATTTGTCTTTGAAACTTTCAAAAAGTTGCGCCCTGGAATCCCATTGAAGTGTCTCCATGGAAGGATGAAGCAGGACAAAAGGATGGGGATATATTCTGCGTTCTGTGAGAAGCGCTCAGTTCTCTTCTCCACAGATGTAGCCTCTAGAGGTCTTGATTTTAATAAGGCTGTTGACTGGGTTGTACAGGTTGATTGCCCAGAAGATGTGGCTTCTTACATACATAGAGTTGGTCGCACTGCCCGGTATCATTCAGGTGGGAGATCAGTTTTATTTATTATGCCCTCGGAAATGAAAATGCTTGAACGATTGGAATCAGCCAAAGTACCTATTCAGCTTATCAAGGCGAATACAAAAAGACTTCAACCAGTTTCTGGTTTGCTGTCAGCCTTGTTAGTCAAGTACCCTAATTTTCAGCAACTTGCTCAAAGGGCCTTTATCACATATCTTCGGTCAATTCATATCCAGAAGGATAAAGAAATATTTGATGTTATGAAACTGTCAATTGACGATTTTTCAGCTTCATTGGGGTTGCCAATGACCCCAAAAATTCGTTTCATTGATCAGAAAAGGAGGTCACAGAAGATGTCTGCTAATCCTACCACTTTTCTTGCATTGGAATCGTCAGGTAACGAGAATGCTTTCAGTATGTCAGATGGAGAATTGGAGTATGGTGACTTTAAAGAAAGCGACCAAGGACTTCTTCCACCTATTGATACCCCTTCTAGTGAAGTTGAAGATGCTGTGCCACCTACTCGGATTTTGAAGAAGAAGAAGTTAAAGATCAATGTCCACAGGCCAGTAGGGACTAGAGTCAGTTTTGATGATGATGGCAACCCACTTGCCCCTCTAGCTAGGTTAGCTGACATCAAGGGTAGCAATGAGACATTTGTAGTCGATAAAGATCAAAAGAATGAGTTTTACAAAAAGAGGAGGGAAGAGTTAAAACAAGCTGACAAGGAAGACAAACTTCTCAATCGTAATCGTCTTAAAGAGAAACGGAAGGAGAAGATGAATAAGATGAAGAAGAGGGCCGCCAAAGAAAGTCAGGACGAAGAAGATGATGTTTCTGGGTCTGAAGAAGAAAGGCCTCAGAAAAGGTCCAAGAAATTTGTTGACAGTGATAGTGATATTGACAATAAAGTAGAAAACAACTTCAATACAAAGTCCATTTCAGTGGCAGAACAAGAGGAGTTGGCTCTCAAATTATTGAGTACTTTGCAACCATAA 2205 42.4 MKQKFKSKKSGKQKRLSEIEEIELLNSWIESQKPDSGSNPMSLPPPPANATVGRIDADTYSRYAGATRFDQLPISSKTKDGLRKAEFVDMTDIQKASLPHALCGRDILGAAKTGSGKTLAFLIPVLEKLYRERWGPEAGVGSIIVSPTRELGAQLFDVLKAVGRFHNFSAGLLIGGRKDINTEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIVSQLPKRRQTFLFSATQTKSVQDLARLSLKDPEYLSVHAESVTATPNSLQQTAMVVPLEQKLDMLWSFIKAHLNSKILVFLSSCKQVKFVFETFKKLRPGIPLKCLHGRMKQDKRMGIYSAFCEKRSVLFSTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYHSGGRSVLFIMPSEMKMLERLESAKVPIQLIKANTKRLQPVSGLLSALLVKYPNFQQLAQRAFITYLRSIHIQKDKEIFDVMKLSIDDFSASLGLPMTPKIRFIDQKRRSQKMSANPTTFLALESSGNENAFSMSDGELEYGDFKESDQGLLPPIDTPSSEVEDAVPPTRILKKKKLKINVHRPVGTRVSFDDDGNPLAPLARLADIKGSNETFVVDKDQKNEFYKKRREELKQADKEDKLLNRNRLKEKRKEKMNKMKKRAAKESQDEEDDVSGSEEERPQKRSKKFVDSDSDIDNKVENNFNTKSISVAEQEELALKLLSTLQP 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6126495 6133265 + CcPI632755_10g005110.1 Cco10g0511 189469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0511 734 SMART DUF4217_3 448 511 IPR025313 -
Cco10g0511 734 CDD DEADc_DDX10 78 276 - -
Cco10g0511 734 Gene3D - 53 279 IPR027417 -
Cco10g0511 734 Pfam Helicase conserved C-terminal domain 299 408 IPR001650 -
Cco10g0511 734 MobiDBLite consensus disorder prediction 641 716 - -
Cco10g0511 734 PANTHER RNA HELICASE 67 672 - GO:0005634(PANTHER)|GO:0006364(PANTHER)
Cco10g0511 734 SMART helicmild6 326 409 IPR001650 -
Cco10g0511 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 429 IPR027417 -
Cco10g0511 734 Coils Coil 623 643 - -
Cco10g0511 734 Pfam DEAD/DEAH box helicase 91 262 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cco10g0511 734 MobiDBLite consensus disorder prediction 684 707 - -
Cco10g0511 734 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Cco10g0511 734 SMART ultradead3 86 290 IPR014001 -
Cco10g0511 734 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 219 227 IPR000629 -
Cco10g0511 734 MobiDBLite consensus disorder prediction 641 657 - -
Cco10g0511 734 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 295 447 IPR001650 -
Cco10g0511 734 Gene3D - 285 526 IPR027417 -
Cco10g0511 734 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 95 IPR014014 GO:0003724(InterPro)
Cco10g0511 734 CDD SF2_C_DEAD 287 418 - -
Cco10g0511 734 Pfam Domain of unknown function (DUF4217) 461 509 IPR025313 -
Cco10g0511 734 Coils Coil 645 687 - -
Cco10g0511 734 MobiDBLite consensus disorder prediction 30 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0511 K14776 - - csv:101213480 1303.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1729 Cco-Chr1:30012581 Cco10g0511 Cco-Chr10:6126495 6.30E-90 dispersed
Cco07g0487 Cco-Chr7:5862000 Cco10g0511 Cco-Chr10:6126495 1.40E-63 dispersed
Cco09g0956 Cco-Chr9:9032791 Cco10g0511 Cco-Chr10:6126495 1.40E-56 dispersed
Cco10g0511 Cco-Chr10:6126495 Cco10g0826 Cco-Chr10:16958363 4.80E-48 dispersed
Cco10g0511 Cco-Chr10:6126495 Cco01g0302 Cco-Chr1:2957550 2.40E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32