Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0517 ATGCAAGGGTTAGGTGTTGCGCAACTGCCACCAGAAATTGGGAAGCTCTGGACAGAGACGCGTGAGAAACGCCTAATTTGGCTCAACAAGCTTTCTGAAAATGGCGGAAATAGCCACTCACACCATCCTTCTCAAATTAGCAAATTTGACTCAGTCTCTCTCGATTCCAAACTTGAAGGGTTTCCTACTGCAACAAAGAAGAAAAACAAGCTTCATGAGGAGAAAGTCAATAGGAAGTCTTTGAAAAAGAGCATTAAAGAGTATCATGACACAAAAACTTTAGCCTCATTTGCCAACATTTCCTTTAAATCTGATAGCAGTCGGCGAAGGTACATAACTGAGGAGATAAAAAAGTTAGGAAAAGGAAACATCTCTGCTCAAATTTTTACATTTTGTGAGCTATCTACGGCTACAAATAACTTCAACCACGAAAATCTGTTGGGGGAAGGTGGTTTTGGAAGGGTTTACAAAGGCGTCATTGAAAGCACACAACAAATAACGGCCGTGAAGCAACTTGACCGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCTAATCTTGTGAATTTGGTTGGGTATTGTGCTGATGGGGATCAGAGAATTTTGGTTTATGAGTACATGGCTAAAGGTTCCTTGGAGGATCATCTTCTTGATATAGCATCAGATAAGCCACCTCTGGACTGGAAGACAAGGATGAAAATTGCCGAAGGAGCAGCAAAAGGACTTGAATACTTGCACGAAACTGCTAATCCTCCCGTGATATACCGTGATTTCAAAGCTTCAAACATATTGTTGGACGAGGAATTCAATCCAAAGCTCTCTGATTTTGGTCTTGCAAAGTTAGGTCCTACTGGGGACAAATCTCATGTTTCCACTAGGGTGATGGGAACCTATGGCTACTGTGCTCCTGAATATGCACTTACAGGACAATTGACGACGAAATCAGATGTCTATAGTTTCGGTGTCGTGTTTCTGGAGATTATAACTGGAAGAAGGGTTATAGACAATGCAAGACCAACAGCAGAACAAAATTTAATTACTTGGGCACAACCACTTTTCAAAGACAGAAGGAAATTTACCCTAATGGCAGATCCAAAGCTAGAAGGAAATTATCCAGTGAAGGCTCTGTATCAAGCTTTGGCAGTGGCAGCCATGTGTTTACAAGAGGAAGCGGGTACTCGACCATTAATCAGCGACGTGGTTACGGCCCTTGAATATTTAGCTGCAAACAAGGATGTCGATGCAGACGTAGATGATGAATCAGATTCAGGATCGGTATTGGGATCGGGATCAGGTTCAGCTTCTCCTGATAGAAGTAGTAACAATGGAGATAAAAATGTTGATCTTGAGGGTGATGGGAGGTGA 1398 41.99 MQGLGVAQLPPEIGKLWTETREKRLIWLNKLSENGGNSHSHHPSQISKFDSVSLDSKLEGFPTATKKKNKLHEEKVNRKSLKKSIKEYHDTKTLASFANISFKSDSSRRRYITEEIKKLGKGNISAQIFTFCELSTATNNFNHENLLGEGGFGRVYKGVIESTQQITAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYEYMAKGSLEDHLLDIASDKPPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVAAMCLQEEAGTRPLISDVVTALEYLAANKDVDADVDDESDSGSVLGSGSGSASPDRSSNNGDKNVDLEGDGR 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6168963 6173457 + CcPI632755_10g005170.1 Cco10g0517 189475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0517 465 MobiDBLite consensus disorder prediction 426 465 - -
Cco10g0517 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0517 465 PANTHER OS07G0668900 PROTEIN 84 425 - -
Cco10g0517 465 Gene3D Phosphorylase Kinase; domain 1 100 217 - -
Cco10g0517 465 Pfam Protein kinase domain 142 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0517 465 FunFam Serine/threonine-protein kinase PBS1 218 433 - -
Cco10g0517 465 ProSiteProfiles Protein kinase domain profile. 141 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0517 465 MobiDBLite consensus disorder prediction 435 453 - -
Cco10g0517 465 CDD STKc_IRAK 147 416 - -
Cco10g0517 465 SUPERFAMILY Protein kinase-like (PK-like) 125 413 IPR011009 -
Cco10g0517 465 Gene3D Transferase(Phosphotransferase) domain 1 218 437 - -
Cco10g0517 465 FunFam Serine/threonine-protein kinase CDL1-like 112 217 - -
Cco10g0517 465 ProSitePatterns Protein kinases ATP-binding region signature. 147 170 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0517 Cco-Chr10:6168963 Cco10g2058 Cco-Chr10:33962794 3.40E-132 dispersed
Cco10g1720 Cco-Chr10:30746119 Cco10g0517 Cco-Chr10:6168963 4.70E-56 dispersed
Cco09g1074 Cco-Chr9:10259692 Cco10g0517 Cco-Chr10:6168963 5.90E-175 transposed
Cco10g0517 Cco-Chr10:6168963 Cco03g0496 Cco-Chr3:5177807 8.30E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87138 PF00069 Pkinase 8.80E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0517 - - - 0.0