Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0522 ATGATCTCTTCTTTCACTCAATCTGCAAAACCCATTAGTGGGTCCGACGTGGTTCTCCGGCGGAGTGGTCCGGCGTTAATCCGGCGGTTTTCATGTCCACCTCCATTGCCGGCGCAAAAACCTCAAGGCTCCGTTGTGTGTATGAAAAATGCTCTCCATATCTCATCGGTTTCCAATTTTGGGCCGCTGGGAACTCGGGAGAGTGATTTGATCACGTGCAAGGCCTACGAGGCTGACCGATCGCAGCCGATTGAGTCGAACATTGAAATAACGGTGGCCGAAACGCCGTCCGAGGCGGCGAAGAAGGTCAAGATCGGACTGTATTTTGCTCTCTGGTGGAGTTTGAACGTCGTGTTCAACATTTACAACAAGAAAGTTTTGAACGCGTATCCATATCCATGGCTAACCTCCACACTTTCTCTTGCTGTTGGCTCTCTCATCATGTTAGTCTCTTGGATGACGAGGATCGCCGAGGCTCCCAAGACCGATTTCGAGTTCTGGAAATCCTTGTTCCCTGTTGCTGTGGCCCATACAATTGGCCATGTAGCGGCAACAGTGAGCATGTCAAAGGTTGCTGTCTCATTCACTCATATCATCAAGAGTGGGGAGCCTGCATTCAGCGTATTGGTTTCGAGGTTCCTGTTGGGTGAGACTTTTCCTGTTCCAGTCTACCTCTCTCTTCTCCCGATCATTGGTGGCTGTGCGCTTGCTGCCGTGACCGAGCTCAACTTCAATATGATAGGTTTCATGGGAGCCATGATATCAAACTTGGCATTTGTCTTCAGAAACATATTTTCCAAGAAAGGCATGAAGGGGAAGTCTGTTAGTGGAATGAACTACTACGCCTGTTTGTCTATATTGTCCCTTTTGATTCTTACCCCATTCGCAATTGCTGTCGAAGGACCGCAGATGTGGGCTGCAGGATGGAAAACAGCTCTCTCTGAGATTGGACCTAATTTTGTTTGGTGGTTAGCAGCACAGAGTGTCTTCTATCATCTCTACAACCAAGTATCCTACATGTCGCTGGACGAAATTTCTCCCTTGACATTCAGCATTGGCAACACCATGAAACGTATATCTGTCATAGTTTCTGCAATAATCATCTTCCGCACGCCTATACAACCCGTCAACACTCTCGGAGCTGCGATCGCCGTTCTTGGAACCTTCTTATATTCACAGGCAAAACAATGA 1191 48.03 MISSFTQSAKPISGSDVVLRRSGPALIRRFSCPPPLPAQKPQGSVVCMKNALHISSVSNFGPLGTRESDLITCKAYEADRSQPIESNIEITVAETPSEAAKKVKIGLYFALWWSLNVVFNIYNKKVLNAYPYPWLTSTLSLAVGSLIMLVSWMTRIAEAPKTDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLLILTPFAIAVEGPQMWAAGWKTALSEIGPNFVWWLAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSAIIIFRTPIQPVNTLGAAIAVLGTFLYSQAKQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6216407 6219854 - CcPI632755_10g005220.1 Cco10g0522 189480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0522 396 Pfam Triose-phosphate Transporter family 104 392 IPR004853 -
Cco10g0522 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 145 239 - -
Cco10g0522 396 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 104 395 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cco10g0522 396 PANTHER SOLUTE CARRIER FAMILY 35 99 395 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2643 Cco-Chr5:34550158 Cco10g0522 Cco-Chr10:6216407 3.40E-62 dispersed
Cco09g2120 Cco-Chr9:35597766 Cco10g0522 Cco-Chr10:6216407 3.30E-59 dispersed
Cco05g1659 Cco-Chr5:23174210 Cco10g0522 Cco-Chr10:6216407 3.30E-184 transposed
Cco10g0522 Cco-Chr10:6216407 Cco04g1994 Cco-Chr4:34114037 4.60E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0522 K15283 - csv:101216838 731.865