Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0526 ATGATGGGTAAGAAGAGCAATTTTGGAGTTTTTTCTCAAAACAAAGCATGTTTTAATTTTGTAGTGAAGTTGTTTGGAGTAATGATGTTGGTTCAAAAGGTTTGTGGAGTTGAGTTTCAAGTGGGAGGATCAAATGGTGTTTGGGGAGTTTCTTCAGATCCTAATGCTCAAAGTTTTAATCAATGGGCTGAATCAAGAAGATTTCAAATTGGAGACTCCTTAGTGTTCAACTACCAAGCTGGGCAAGACTCAGTACTGTTAGTAAATGAAGATGACTACAAAAATTGCCACACAGAATCACCCATAAAGCACTTCTCAGATGGCCACACTGTCATTAAGTTTGAAAAGTCTGGCCCTCATTATTTCATAAGTGGTATCAAAGACAATTGCCTAAAGAACGAGAAAATGGTGGTGGTTGTCTTGGCTGATAGAACCAAGCAATACTCTTCTCCACCCCCGGCTCCGGCTGCCGGTTCCCAACCGCCCGAAGCTTCCGTCCAGATGAACCCGACCCCGTCCCCGATCTCCGAGGAGCCCCCTGCTAATGCTGCATCGTCGTCTATCGTCACCTTCTTGGGTTTAACTGGAGTGTTTGCTACTTCAACTGCTCTTCTTTTGTAA 621 43.64 MMGKKSNFGVFSQNKACFNFVVKLFGVMMLVQKVCGVEFQVGGSNGVWGVSSDPNAQSFNQWAESRRFQIGDSLVFNYQAGQDSVLLVNEDDYKNCHTESPIKHFSDGHTVIKFEKSGPHYFISGIKDNCLKNEKMVVVVLADRTKQYSSPPPAPAAGSQPPEASVQMNPTPSPISEEPPANAASSSIVTFLGLTGVFATSTALLL 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6272223 6274219 - CcPI632755_10g005260.1 Cco10g0526 189484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0526 206 ProSiteProfiles Phytocyanin domain profile. 37 142 IPR003245 GO:0009055(InterPro)
Cco10g0526 206 MobiDBLite consensus disorder prediction 162 181 - -
Cco10g0526 206 PANTHER BLUE COPPER PROTEIN 32 161 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cco10g0526 206 MobiDBLite consensus disorder prediction 147 181 - -
Cco10g0526 206 FunFam Early nodulin-like protein 1 36 145 - -
Cco10g0526 206 CDD OsENODL1_like 38 141 IPR041846 -
Cco10g0526 206 Gene3D - 37 152 IPR008972 -
Cco10g0526 206 SUPERFAMILY Cupredoxins 36 141 IPR008972 -
Cco10g0526 206 Pfam Plastocyanin-like domain 57 132 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0526 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1671 Cco-Chr5:23476241 Cco10g0526 Cco-Chr10:6272223 6.50E-42 dispersed
Cco08g1549 Cco-Chr8:27154321 Cco10g0526 Cco-Chr10:6272223 5.60E-27 dispersed
Cco09g2339 Cco-Chr9:37572128 Cco10g0526 Cco-Chr10:6272223 5.30E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g460 . . Bda07g00343 . . . . . Cmo16g00907 Cmo04g01014 Cma01g01146 . . . Sed04g3189 . . Bhi09g01933 Tan01g4518 Cmetu04g2832 . Hepe01g1302 Mch11g1162 . Cla10g00524 Cam10g0519 Cec10g0536 Cco10g0526 Clacu10g0541 Cmu10g1367 Cre10g0769 . . . . Lsi04g01232 Csa03g00531 Chy04g00987 Cme06g02276 . . . . . . . . Sed07g1925 Cmo01g01199 . Cma04g00944 Cma16g00852 Car04g00882 Car16g00852 . . Bhi11g00646 Tan01g1683 Cmetu06g0869 . . Mch10g1234 . Cla05g01522 Cam05g1635 Cec05g1638 Cco05g1671 Clacu05g1624 Cmu05g1522 . Lsi05g00619 . Chy06g01800 Cme04g00836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003173 1 2 0 0 0 2 3 2 2 2 2 2 3 2 2 2 2 0 0 2 2 2 2 2 2 3 2 2 2 1 51