Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0542 | ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTACCGGCTTTTCCTGGTCTATGACTCCCCTCAACGGCTCCGCCAATGTCAGCACGGAAATTGAAGGATCACTGTTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCGAAAGCCTGTAGGGAAAAGCTGCGGAGGGACAGATTAAATGACAAGTTTCTCGAATTGGGCGCTATTCTGGAGCCAGGTAGACCACCTAAGACCGACAAGGCTGCCATTTTGATCGATGCTGTTCGGATGGTCACTCAGTTACGTGGTGAAGCCCAGATGTTGAAGGATTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAAAAGAATGAGCTTCGTGATGAGAAACAGAGGTTAAAAGTGGAGAAAGAGAAGTTGGAACAGCAACTAAAAGCCATAAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTGCCACTTTTGCTGCTCAAGGCCAAGCACCTGGAAACAAGTTGGTTCCTTTCATCGGCTACCCTGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCAGTCGACACCTCACAAGATCACGTACTCCGACCTCCTGTTGCTTAA | 705 | 47.8 | MVSPETTNWLFDYALMDDIPVSDANFSPPTTGFSWSMTPLNGSANVSTEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRMVTQLRGEAQMLKDSNTSLSEKIKELKAEKNELRDEKQRLKVEKEKLEQQLKAINSQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6492922 | 6496226 | + | CcPI632755_10g005420.1 | Cco10g0542 | 189500 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0542 | 234 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 126 | IPR011598 | GO:0046983(InterPro) | |
Cco10g0542 | 234 | Coils | Coil | 130 | 178 | - | - | |
Cco10g0542 | 234 | Gene3D | - | 78 | 153 | IPR036638 | GO:0046983(InterPro) | |
Cco10g0542 | 234 | Pfam | Helix-loop-helix DNA-binding domain | 79 | 127 | IPR011598 | GO:0046983(InterPro) | |
Cco10g0542 | 234 | CDD | bHLH_AtILR3_like | 83 | 155 | - | - | |
Cco10g0542 | 234 | FunFam | Transcription factor bHLH34 | 66 | 124 | - | - | |
Cco10g0542 | 234 | PANTHER | BHLH TRANSCRIPTION FACTOR | 7 | 234 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
Cco10g0542 | 234 | SMART | finulus | 81 | 132 | IPR011598 | GO:0046983(InterPro) | |
Cco10g0542 | 234 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 80 | 150 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0899 | Cco-Chr2:10824027 | Cco10g0542 | Cco-Chr10:6492922 | 1.80E-60 | dispersed | |
Cco05g0504 | Cco-Chr5:4055064 | Cco10g0542 | Cco-Chr10:6492922 | 6.30E-28 | dispersed | |
Cco05g1689 | Cco-Chr5:24706954 | Cco10g0542 | Cco-Chr10:6492922 | 2.70E-77 | dispersed | |
Cco06g1830 | Cco-Chr6:28600497 | Cco10g0542 | Cco-Chr10:6492922 | 9.20E-06 | dispersed | |
Cco10g0542 | Cco-Chr10:6492922 | Cco03g0510 | Cco-Chr3:5255238 | 1.70E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60073 | PF00010 | HLH | 1.10E-09 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0542 | - | - | - | 0.0 |