Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0542 ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTACCGGCTTTTCCTGGTCTATGACTCCCCTCAACGGCTCCGCCAATGTCAGCACGGAAATTGAAGGATCACTGTTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCGAAAGCCTGTAGGGAAAAGCTGCGGAGGGACAGATTAAATGACAAGTTTCTCGAATTGGGCGCTATTCTGGAGCCAGGTAGACCACCTAAGACCGACAAGGCTGCCATTTTGATCGATGCTGTTCGGATGGTCACTCAGTTACGTGGTGAAGCCCAGATGTTGAAGGATTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAAAAGAATGAGCTTCGTGATGAGAAACAGAGGTTAAAAGTGGAGAAAGAGAAGTTGGAACAGCAACTAAAAGCCATAAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTGCCACTTTTGCTGCTCAAGGCCAAGCACCTGGAAACAAGTTGGTTCCTTTCATCGGCTACCCTGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCAGTCGACACCTCACAAGATCACGTACTCCGACCTCCTGTTGCTTAA 705 47.8 MVSPETTNWLFDYALMDDIPVSDANFSPPTTGFSWSMTPLNGSANVSTEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRMVTQLRGEAQMLKDSNTSLSEKIKELKAEKNELRDEKQRLKVEKEKLEQQLKAINSQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6492922 6496226 + CcPI632755_10g005420.1 Cco10g0542 189500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0542 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Cco10g0542 234 Coils Coil 130 178 - -
Cco10g0542 234 Gene3D - 78 153 IPR036638 GO:0046983(InterPro)
Cco10g0542 234 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Cco10g0542 234 CDD bHLH_AtILR3_like 83 155 - -
Cco10g0542 234 FunFam Transcription factor bHLH34 66 124 - -
Cco10g0542 234 PANTHER BHLH TRANSCRIPTION FACTOR 7 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cco10g0542 234 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
Cco10g0542 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0899 Cco-Chr2:10824027 Cco10g0542 Cco-Chr10:6492922 1.80E-60 dispersed
Cco05g0504 Cco-Chr5:4055064 Cco10g0542 Cco-Chr10:6492922 6.30E-28 dispersed
Cco05g1689 Cco-Chr5:24706954 Cco10g0542 Cco-Chr10:6492922 2.70E-77 dispersed
Cco06g1830 Cco-Chr6:28600497 Cco10g0542 Cco-Chr10:6492922 9.20E-06 dispersed
Cco10g0542 Cco-Chr10:6492922 Cco03g0510 Cco-Chr3:5255238 1.70E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60073 PF00010 HLH 1.10E-09 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0542 - - - 0.0