Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0563 ATGGCGGAGGAGTTTCAGAGCACTGGAAACTGGTGGGAGGCTTCTAGAAATCGCTACGAAGCCGGAATATCCCCTTCCTCCTCCTCCATCACCACCTTCGTCGACCACTCCGACTCCGCCGCCGCCTCCGATCCCAATTTGCACATCATGGGCTTAGGCCTCGATTGGAATCAACCCCTCTTTAGGGGCGGCGGAGAGAAGGCGGCGGAGGGAAGTTTCCGGTCGATGCTACAACCGGAAAATATGAATTTAAATATGCAAGAAACAGGGCAGCAGCAGCAGCAGCAGCAACAGATTCAATGGATGAGATCGGAGAAGCTATATTCAGGGGAGTCTCCGGCGACCGAATTTAAGGCAATAAACAGAGGATTTTCATTAGATCATCATCAAGCTCAACCCCAGTTCAGTAGCCCTTCTCACTACAGCTCCGGTGACAGTACCGTCACTAGTTTTCCGATCGACACCGCCGCCAATTTATACGGAAATTCCGCAACATTATTACAAGGCTTATTAGCCAGCGGCGGGGAGCAGCAGCAGCAACAGCAACAACAACAACAAGTCTCAGCGGCTGTAGGTATGAACTACCCTTACAATTCCCATTTCGGAATGAACACCGGCGAGTTAATGGCGGGAGGAGCGTCGTGGTCGCCGTCTAAAGTGCCTCAGTTTTTAAGAAACTCACCGCCAAAAGGGGCGGCGGCGGCAACTCCACATAGTCAGTTACAATTTTCGAACAACACGGCGTTCTGGAACGCGTCGGATATGAAAGACGTGAGACCCAGTTATTTTCCGGCGTCGTACAACACCGCTGCAGCTTTCGCCGATAAATCAAAGAATATATCGGAGGTTGGTGATTCGGTAACAACAGTAGGAAAAAAAAGTGGAAATGATCACAATCAGCAATCCGCCGCTGCTAAAAGGCCTCGAAATGAAACTCCTTCGCCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTGTCTGAAGCAATTGAATACATAAAGTTCCTCCATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGCAGTACAGCAACAACATCAGCAGCAGAGATGTGAGAAATCAAAGGAAGGAGAAGAAGGAAAGCAAGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACCTTCAGATAA 1302 48.77 MAEEFQSTGNWWEASRNRYEAGISPSSSSITTFVDHSDSAAASDPNLHIMGLGLDWNQPLFRGGGEKAAEGSFRSMLQPENMNLNMQETGQQQQQQQQIQWMRSEKLYSGESPATEFKAINRGFSLDHHQAQPQFSSPSHYSSGDSTVTSFPIDTAANLYGNSATLLQGLLASGGEQQQQQQQQQQVSAAVGMNYPYNSHFGMNTGELMAGGASWSPSKVPQFLRNSPPKGAAAATPHSQLQFSNNTAFWNASDMKDVRPSYFPASYNTAAAFADKSKNISEVGDSVTTVGKKSGNDHNQQSAAAKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAAVQQQHQQQRCEKSKEGEEGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6983232 6987265 - CcPI632755_10g005630.1 Cco10g0563 189521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0563 433 Gene3D - 320 391 IPR036638 GO:0046983(InterPro)
Cco10g0563 433 FunFam Transcription factor bHLH123 family 320 384 - -
Cco10g0563 433 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 98 412 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco10g0563 433 SMART finulus 321 365 IPR011598 GO:0046983(InterPro)
Cco10g0563 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 374 IPR036638 GO:0046983(InterPro)
Cco10g0563 433 MobiDBLite consensus disorder prediction 287 308 - -
Cco10g0563 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983(InterPro)
Cco10g0563 433 CDD bHLH_AtbHLH_like 316 367 IPR045239 -
Cco10g0563 433 MobiDBLite consensus disorder prediction 287 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1752 Cco-Chr4:32510748 Cco10g0563 Cco-Chr10:6983232 6.20E-25 dispersed
Cco04g2023 Cco-Chr4:34307920 Cco10g0563 Cco-Chr10:6983232 7.90E-56 dispersed
Cco05g2115 Cco-Chr5:30128020 Cco10g0563 Cco-Chr10:6983232 8.30E-27 dispersed
Cco07g1391 Cco-Chr7:27991373 Cco10g0563 Cco-Chr10:6983232 3.00E-24 dispersed
Cco09g2203 Cco-Chr9:36364036 Cco10g0563 Cco-Chr10:6983232 8.80E-09 dispersed
Cco10g0563 Cco-Chr10:6983232 Cco02g1832 Cco-Chr2:31226410 1.40E-07 dispersed
Cco07g1603 Cco-Chr7:30066858 Cco10g0563 Cco-Chr10:6983232 1.70E-25 transposed
Cco11g0092 Cco-Chr11:1040851 Cco10g0563 Cco-Chr10:6983232 4.40E-28 transposed
Cco10g0563 Cco-Chr10:6983232 Cco03g0530 Cco-Chr3:5451918 9.50E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0563 - - - 0.0