Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0563 | ATGGCGGAGGAGTTTCAGAGCACTGGAAACTGGTGGGAGGCTTCTAGAAATCGCTACGAAGCCGGAATATCCCCTTCCTCCTCCTCCATCACCACCTTCGTCGACCACTCCGACTCCGCCGCCGCCTCCGATCCCAATTTGCACATCATGGGCTTAGGCCTCGATTGGAATCAACCCCTCTTTAGGGGCGGCGGAGAGAAGGCGGCGGAGGGAAGTTTCCGGTCGATGCTACAACCGGAAAATATGAATTTAAATATGCAAGAAACAGGGCAGCAGCAGCAGCAGCAGCAACAGATTCAATGGATGAGATCGGAGAAGCTATATTCAGGGGAGTCTCCGGCGACCGAATTTAAGGCAATAAACAGAGGATTTTCATTAGATCATCATCAAGCTCAACCCCAGTTCAGTAGCCCTTCTCACTACAGCTCCGGTGACAGTACCGTCACTAGTTTTCCGATCGACACCGCCGCCAATTTATACGGAAATTCCGCAACATTATTACAAGGCTTATTAGCCAGCGGCGGGGAGCAGCAGCAGCAACAGCAACAACAACAACAAGTCTCAGCGGCTGTAGGTATGAACTACCCTTACAATTCCCATTTCGGAATGAACACCGGCGAGTTAATGGCGGGAGGAGCGTCGTGGTCGCCGTCTAAAGTGCCTCAGTTTTTAAGAAACTCACCGCCAAAAGGGGCGGCGGCGGCAACTCCACATAGTCAGTTACAATTTTCGAACAACACGGCGTTCTGGAACGCGTCGGATATGAAAGACGTGAGACCCAGTTATTTTCCGGCGTCGTACAACACCGCTGCAGCTTTCGCCGATAAATCAAAGAATATATCGGAGGTTGGTGATTCGGTAACAACAGTAGGAAAAAAAAGTGGAAATGATCACAATCAGCAATCCGCCGCTGCTAAAAGGCCTCGAAATGAAACTCCTTCGCCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTGTCTGAAGCAATTGAATACATAAAGTTCCTCCATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGCAGTACAGCAACAACATCAGCAGCAGAGATGTGAGAAATCAAAGGAAGGAGAAGAAGGAAAGCAAGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACCTTCAGATAA | 1302 | 48.77 | MAEEFQSTGNWWEASRNRYEAGISPSSSSITTFVDHSDSAAASDPNLHIMGLGLDWNQPLFRGGGEKAAEGSFRSMLQPENMNLNMQETGQQQQQQQQIQWMRSEKLYSGESPATEFKAINRGFSLDHHQAQPQFSSPSHYSSGDSTVTSFPIDTAANLYGNSATLLQGLLASGGEQQQQQQQQQQVSAAVGMNYPYNSHFGMNTGELMAGGASWSPSKVPQFLRNSPPKGAAAATPHSQLQFSNNTAFWNASDMKDVRPSYFPASYNTAAAFADKSKNISEVGDSVTTVGKKSGNDHNQQSAAAKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAAVQQQHQQQRCEKSKEGEEGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR | 433 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6983232 | 6987265 | - | CcPI632755_10g005630.1 | Cco10g0563 | 189521 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0563 | 433 | Gene3D | - | 320 | 391 | IPR036638 | GO:0046983(InterPro) | |
Cco10g0563 | 433 | FunFam | Transcription factor bHLH123 family | 320 | 384 | - | - | |
Cco10g0563 | 433 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 98 | 412 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cco10g0563 | 433 | SMART | finulus | 321 | 365 | IPR011598 | GO:0046983(InterPro) | |
Cco10g0563 | 433 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 320 | 374 | IPR036638 | GO:0046983(InterPro) | |
Cco10g0563 | 433 | MobiDBLite | consensus disorder prediction | 287 | 308 | - | - | |
Cco10g0563 | 433 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 310 | 359 | IPR011598 | GO:0046983(InterPro) | |
Cco10g0563 | 433 | CDD | bHLH_AtbHLH_like | 316 | 367 | IPR045239 | - | |
Cco10g0563 | 433 | MobiDBLite | consensus disorder prediction | 287 | 316 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1752 | Cco-Chr4:32510748 | Cco10g0563 | Cco-Chr10:6983232 | 6.20E-25 | dispersed | |
Cco04g2023 | Cco-Chr4:34307920 | Cco10g0563 | Cco-Chr10:6983232 | 7.90E-56 | dispersed | |
Cco05g2115 | Cco-Chr5:30128020 | Cco10g0563 | Cco-Chr10:6983232 | 8.30E-27 | dispersed | |
Cco07g1391 | Cco-Chr7:27991373 | Cco10g0563 | Cco-Chr10:6983232 | 3.00E-24 | dispersed | |
Cco09g2203 | Cco-Chr9:36364036 | Cco10g0563 | Cco-Chr10:6983232 | 8.80E-09 | dispersed | |
Cco10g0563 | Cco-Chr10:6983232 | Cco02g1832 | Cco-Chr2:31226410 | 1.40E-07 | dispersed | |
Cco07g1603 | Cco-Chr7:30066858 | Cco10g0563 | Cco-Chr10:6983232 | 1.70E-25 | transposed | |
Cco11g0092 | Cco-Chr11:1040851 | Cco10g0563 | Cco-Chr10:6983232 | 4.40E-28 | transposed | |
Cco10g0563 | Cco-Chr10:6983232 | Cco03g0530 | Cco-Chr3:5451918 | 9.50E-28 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0563 | - | - | - | 0.0 |