Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0571 ATGTCTCCAATCAAACCTCCACCACTAAACCGACCAGAGTTTCGAACAATGGCCATTAGAACCGCTTTCGAAAAAGCCGTCGAGGCTCAAAATTATGCAACCCGGTTTGGTCCGAGCTGTAAAACCACGCGCCAGAGAGCCGCGTGGACTGACTGTTTGAAGCTCTACAACGACGTCGTTTTCCAATTAAACCGTACCCTCCAATGCGTTCTTAGCGACGGAACAATCCAACGCCGCCGTTGTACGGATTTCGATGCGCAAACGTGGCTTAGCTCTGCTCTTACTGACATCGATTTGTGCCTCTCCGGCGCGGCGGATCTCAATGTGACGGATTTTATAGCTCCGATCAAATGCCAGAATGTTTCTAAGATGATTAGTAATTGCTTGGCCATTAATGGGGTATTTTTAAAAGAAGGGGTTAAAAGTGTAAATAGAATCGGAGTGGAGTTTGATCAAAATGGGTCGTTTCCGATGTGGGTTTCGGATGGTGATCGGAAATTGTTGCAGTCATCCGCTAAGGTGAGGGCTAATTTGGTGGTGGCGAAAGATGGGTCTGGGAAATTTCGGACGGTTCAGGCGGCGATCGATGCGGCGGCGAGGAGGCGTGGGAGGGGGCGATTTGTAATTTATGTAAAACGAGGGGTTTATAGAGAAAATATTGAAGTTGGGAATGATAATGGGAATTTAATGTTGGTGGGAGATGGGATGAGATTTACTGTGATTACAAGTCGAAGAAGCGTCGCCGCCGGCTTCACCACCTTCAGTTCTGCAACCGCTGGTATTCAAGGTCCAGGCTTCATCGCTCGAGACATAAGGTTCGTAAACACAGCCGGTCCACGAATGGGCCAAGCAGTTGCACTACGATCATCGTCGGACCTATCTGTGTTCCATCGATGCAGCTTCGAGGGCTACCAAGACACTCTAATGGTACTCTCACAAAGACAATTCTACAAACAATGTTACATTTACGGTACAATTGACTTCATCTTTGGGAACGCAGCAGTAGTTTTACAAAATTGCATGATTTACGTAAGGAGGCCTTTAAAGGGCCAAGTCAATGTCATAACTGCCCAAGGCCGAGAGGACCCGTTTCAGAACAGCGGAATCTCCATCCACAACTCTCAAATACGAGCCGCTGCTGATTTGCGGCCCATGATTGGCTCGGTCAAGACGTACATGGGTCGGCCCTGGAAGAAGTATTCACGGACAGTGATTATGAGAAGCTACATTGATAGCTTGGTCAGCCCAGCCGGGTGGTTGGCGTGGCAAAAAAGTAAATTTGCTCAAGCTACGTTGTATTATGGGGAGTATCGTAATATTGGGCCTAGGGCTTCCACACGGTTTAGAGTCCAATGGCCGGGTTTTCATGTTATTAGAAGCCCAAATGTGGCTTCTAAGTTCACTGTCCAGAGACTCATCGCCGGCCAAACTTGGCTTCCGGCCACCGGAGTTCCCTTCAAGCTTGGCCTATGA 1473 48.4 MSPIKPPPLNRPEFRTMAIRTAFEKAVEAQNYATRFGPSCKTTRQRAAWTDCLKLYNDVVFQLNRTLQCVLSDGTIQRRRCTDFDAQTWLSSALTDIDLCLSGAADLNVTDFIAPIKCQNVSKMISNCLAINGVFLKEGVKSVNRIGVEFDQNGSFPMWVSDGDRKLLQSSAKVRANLVVAKDGSGKFRTVQAAIDAAARRRGRGRFVIYVKRGVYRENIEVGNDNGNLMLVGDGMRFTVITSRRSVAAGFTTFSSATAGIQGPGFIARDIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYIYGTIDFIFGNAAVVLQNCMIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLRPMIGSVKTYMGRPWKKYSRTVIMRSYIDSLVSPAGWLAWQKSKFAQATLYYGEYRNIGPRASTRFRVQWPGFHVIRSPNVASKFTVQRLIAGQTWLPATGVPFKLGL 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7365276 7368038 + CcPI632755_10g005710.1 Cco10g0571 189529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0571 490 PANTHER PECTINESTERASE 20 481 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco10g0571 490 CDD PMEI-like_3 7 137 - -
Cco10g0571 490 ProSitePatterns Pectinesterase signature 2. 322 331 IPR033131 -
Cco10g0571 490 SUPERFAMILY Pectin lyase-like 174 489 IPR011050 -
Cco10g0571 490 Gene3D - 171 490 IPR012334 -
Cco10g0571 490 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 8 135 IPR035513 -
Cco10g0571 490 SMART PMEI_2 2 131 IPR006501 GO:0004857(InterPro)
Cco10g0571 490 Pfam Pectinesterase 177 475 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco10g0571 490 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 134 IPR035513 -
Cco10g0571 490 FunFam Pectinesterase 171 490 - -
Cco10g0571 490 Pfam Plant invertase/pectin methylesterase inhibitor 12 131 IPR006501 GO:0004857(InterPro)
Cco10g0571 490 NCBIfam pectinesterase inhibitor domain 9 133 IPR006501 GO:0004857(InterPro)
Cco10g0571 490 ProSitePatterns Pectinesterase signature 1. 203 222 IPR018040 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0884 Cco-Chr5:7629229 Cco10g0571 Cco-Chr10:7365276 4.40E-156 dispersed
Cco10g0571 Cco-Chr10:7365276 Cco11g1499 Cco-Chr11:27818807 1.90E-88 dispersed
Cco10g0571 Cco-Chr10:7365276 Cco01g0669 Cco-Chr1:6941135 1.80E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0571 K01051 - csv:101213944 850.892