Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0579 ATGGAAGAATTGAAAGAAGAAATAAAAAGTCAGTTACTGATTACTACAACAAAAGATAACATTGAGAAATTAAGACTCATCGATTCAATTCAACGCTTAGGCGTTTCTTACCATTTCGAAACTGAGATCCACAGAGTTCTTCAACAACTTTATCATAATAGTGCTCAACATGATAATAACCTTCACACTATGACTCTCCGATTCAGACTTCTTAGGCAACAAGGCTACAACATATCATCTCGGCCGTTCGATAAGTTTCGAGGCAAATGGGGAAGTTCATATAATAACAATAATGTAGAAGAACTCTTGAGTTTATACGAAGCATCGCAATTGAGGATGCAAGGAGAGGAAGCATTGGACGAAGCATTTTGTTTTGCTACCGCTCAGTTGGAAGCCATTGTCGGAGACTCTGCCACTGATACAACGGTTGCAGCGGAAGTTCGCCATGCTTTGAAGTGGCCGCTGTACAAGAATCTGCCAAGGCTTGAAGCCAGACACTACATTGGTTTGTTCAGCGAGAAGCCATGGAGGAATGAGAGTTTGCTTAACTTTGCAAAGATGGATTTCAACCAATTGCAAAAACTTCATCAGAAAGAGATTGCTTACATCTCAAAGTGGTGGGAAGATTATGGATTTGCAGAAAAGCTATCATTTGCAAGGAACAGGATTGTGGAGGGATATTTTTTTGCTCTTGGGATATTCTTTAAACCTCAATTTTTAAGTGCCAGACTTATTATGACCAAAATCATTGCTATTGGGTCAATGTTAGATGACATTTATGATGTTTATGGCACATTTGAAGAACTCAAACTCTTGACCCTTGCGCTTGAGAGATGGGACAAGAGTGAGACCGACCAACTCCCAAATTATATGAAGATGTACTACGAGGCTTTGTTGGATGTTTTCGAAGAAATTGAAGAAGAAATGAGGCAGCAGAAAACAACACCATATTGCATCCATCACATGAAAGAAGCGACAAAAGAGTTAGGAAGGGTATTTTTGGTAGAGGCAAGATGGTGTAAGGAAGGATACACACCAACTATGGAAGAATACTTGGATATTGCTTTGACATCTTTTGGCCACAAATTGCTTATGGTAACAGCCCTTTTGGGAATGGGAGATTCGGCCACACAACATGCTGTTCAATGGCTCATCTCCATGCCTAATATTCTCAAGGCCTCCACTGTTATTTGTAGGCTCATGAACGACATCGTTTCGCATAAGTTTGAACAAGAACGAGGTCATGTGGCTTCTGCCATTGAATGCTACATGGAACAGAACCGTGTGTTGGAATACGATGCCCTAAATGCATTACACAAACAAATTGATGATTCGTGGAAGGATATGGTTGAGAATTTCTGTGTTATCACCACAGAAAATCAGATTCCGAGGGCCGTTCTTATGAGAGTTTTGAACCTCACAAGATTATTTAATGTGATTTACAAAGATGGAGATGGGTATACGCAATCTCAAGGCTCCACAAAAACTCATATAAAATCTTTGCTTGTAGACTCTGTCCCACTCTAA 1527 39.95 MEELKEEIKSQLLITTTKDNIEKLRLIDSIQRLGVSYHFETEIHRVLQQLYHNSAQHDNNLHTMTLRFRLLRQQGYNISSRPFDKFRGKWGSSYNNNNVEELLSLYEASQLRMQGEEALDEAFCFATAQLEAIVGDSATDTTVAAEVRHALKWPLYKNLPRLEARHYIGLFSEKPWRNESLLNFAKMDFNQLQKLHQKEIAYISKWWEDYGFAEKLSFARNRIVEGYFFALGIFFKPQFLSARLIMTKIIAIGSMLDDIYDVYGTFEELKLLTLALERWDKSETDQLPNYMKMYYEALLDVFEEIEEEMRQQKTTPYCIHHMKEATKELGRVFLVEARWCKEGYTPTMEEYLDIALTSFGHKLLMVTALLGMGDSATQHAVQWLISMPNILKASTVICRLMNDIVSHKFEQERGHVASAIECYMEQNRVLEYDALNALHKQIDDSWKDMVENFCVITTENQIPRAVLMRVLNLTRLFNVIYKDGDGYTQSQGSTKTHIKSLLVDSVPL 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7630932 7638784 - CcPI632755_10g005790.1 Cco10g0579 189537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0579 508 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 2 174 IPR008930 -
Cco10g0579 508 Coils Coil 295 315 - -
Cco10g0579 508 Gene3D - 1 190 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Cco10g0579 508 Pfam Terpene synthase family, metal binding domain 209 448 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Cco10g0579 508 Pfam Terpene synthase, N-terminal domain 2 151 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Cco10g0579 508 SFLD Terpene Cyclase Like 1 C Terminal Domain 178 506 IPR034741 -
Cco10g0579 508 SFLD Isoprenoid Synthase Type I 178 506 - -
Cco10g0579 508 CDD Terpene_cyclase_plant_C1 1 504 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Cco10g0579 508 SUPERFAMILY Terpenoid synthases 177 508 IPR008949 -
Cco10g0579 508 Gene3D Farnesyl Diphosphate Synthase 192 508 IPR008949 -
Cco10g0579 508 PANTHER OS04G0344100 PROTEIN-RELATED 2 487 - -
Cco10g0579 508 FunFam Isoprene synthase, chloroplastic 169 496 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0579 K15803 - - csv:101211540 844.728
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0372 Cco-Chr10:4335250 Cco10g0579 Cco-Chr10:7630932 6.50E-41 dispersed
Cco10g0579 Cco-Chr10:7630932 Cco10g0582 Cco-Chr10:7690287 4.20E-67 dispersed
Cco10g0579 Cco-Chr10:7630932 Cco10g0581 Cco-Chr10:7664963 3.50E-122 proximal
Cco09g2487 Cco-Chr9:38994171 Cco10g0579 Cco-Chr10:7630932 1.00E-35 transposed
Cco10g0579 Cco-Chr10:7630932 Cco03g0523 Cco-Chr3:5323674 9.10E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g400 Blo03g00604 . Bda07g00326 . . . . Bma13g00962 . . . . . . . . . . . . . . . . Cla10g00585 Cam10g0569 Cec10g0603 Cco10g0579 Clacu10g0605 Cmu10g1417 Cre10g0818 . . . . . Csa03g00574 . Cme06g02685 . . . . . . . . Sed06g0194 . . . Cma16g00826 . . . . Bhi11g00692 Tan01g1636 Cmetu06g2161 . . Mch10g1155 . . . . . . . . Lsi05g00660 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013849 0 2 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 2 3 1 1 2 1 0 2 0 25