Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0581 ATGGAGGACGACATGATAGAAGAAGTCCAACAGTTGAAAGAAGAAGTGAGGAAGATGCTAGTTGCTGTGGTTGAAAACCCTATAGATAAGCTAAAGTTGGTTGATTCAATCCAAAAGTTAGGTGTTTTTTACCATTTTGAAAAGGAGATTGATCAAGTTTTGGAAGAAACATATGTGGCGTTTAAGAGTTCATTGAATAATCAAAGTAGCGATGAAGATCTTAATACCGTTGCTCTTCTATTTCGTCTACTCAGACAACAAGGTTATAAAGTTCCATGTGATATATTCTCAAAGTTTGTGGAAGACAATGGAAAATTCAAAGAAACATTAAGGAGTGATGCAAGAGGAATTTTGAGTTTATATGAAGCAACACACATGAGGGTTCATGGAGAAGACTTGCTAGAAGAAGCACTTGATTTTTCAACCAAACATCTTAAACAAATTGTAGAAAACTCAAGCTCTCCTTTCACCACCGAAATCAGCAATGCTTTAAAATTGCCAATAAGAAGGGCTCTCCCAAGAGTAAAAGCAAGAGAGTATATTGAAATCTATCAACAAGATCCTTCACATAATGATGCATTGCTTGCCTTCTCAAAATTAGATTTCAACATACTACAAAAGCTTCATCAAAGTGAGTTGAAGGAAATCACAAGGTGCTGGAAGGATTTGAACGTCCCAAAGAACTTTCCATTTGCGAGAGATCGAATTGTGGAGTGTTATTTTTGGATATTGGGTGTATATTTTGAACCTCAATTCACGATTGGGAGGATAATATTTACCAAATTGCTTGGCATGTTCTCAATTTTGGATGATATATATGATGCTTATGGAACATTTGAAGAACTCCAACTTTACACTTTAGCAATCAAAAGATGGGACATAAGCATGATTAATCAACTCCCGGAGTATATGAAAGTTCATTATAAAACCCTGCTTGGTCTTTACGAAGAGATGGACAAAGAGATGGCGAAGGATGGAACATCATATCGCGCTCACTTTGCAAAGGAAGCAATGAAAAGGCACGCCGAATCCTGTTTCAAAGAAGCTGAATGGCTAAACAAAAAATATAAACCAAAATTTGAAGAATACATGGAAGTGGCTTTAGTTAGCTCAGGTTATGCAATACTTGCAACTATTTCATTTGTTTGCATGGGTGACATTGCAACAAAGGAGGTATTTGATTGGCTTTCAGACTGTTCTAAAATTCTTGAAGCCTCAACCATCATTTTTAGACTCATGAACGATGTTGTCTCCTACAAGTTTGAGCAAGAAAGAGAACATGTTGTTTCCGCGATTGAATGTTATATGGACAATTATGGCCGCTCAGAAGGAGAAACATATGCTGAATTTCGAAAGCAATTAGAAGATGCATGGAAGAATATAAATGAAAGTTGCCTTTGTCCAATGACTGTTCCAATGCCATTTTTATTGCGTGTATTAAATCTTACCAGAGTTATAGCGCTATTTTATTGTGATGTGGATGGATACACAAATTCCAAGGGTAGGACTAAACTTCTTATCCAGTCTATACTTGTTGACCCAGTGTGA 1548 36.43 MEDDMIEEVQQLKEEVRKMLVAVVENPIDKLKLVDSIQKLGVFYHFEKEIDQVLEETYVAFKSSLNNQSSDEDLNTVALLFRLLRQQGYKVPCDIFSKFVEDNGKFKETLRSDARGILSLYEATHMRVHGEDLLEEALDFSTKHLKQIVENSSSPFTTEISNALKLPIRRALPRVKAREYIEIYQQDPSHNDALLAFSKLDFNILQKLHQSELKEITRCWKDLNVPKNFPFARDRIVECYFWILGVYFEPQFTIGRIIFTKLLGMFSILDDIYDAYGTFEELQLYTLAIKRWDISMINQLPEYMKVHYKTLLGLYEEMDKEMAKDGTSYRAHFAKEAMKRHAESCFKEAEWLNKKYKPKFEEYMEVALVSSGYAILATISFVCMGDIATKEVFDWLSDCSKILEASTIIFRLMNDVVSYKFEQEREHVVSAIECYMDNYGRSEGETYAEFRKQLEDAWKNINESCLCPMTVPMPFLLRVLNLTRVIALFYCDVDGYTNSKGRTKLLIQSILVDPV 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7664963 7670476 + CcPI632755_10g005810.1 Cco10g0581 189539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0581 515 PANTHER OS04G0344100 PROTEIN-RELATED 6 496 - -
Cco10g0581 515 Coils Coil 2 22 - -
Cco10g0581 515 FunFam Isoprene synthase, chloroplastic 168 505 - -
Cco10g0581 515 CDD Terpene_cyclase_plant_C1 2 514 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Cco10g0581 515 SFLD Isoprenoid Synthase Type I 190 514 - -
Cco10g0581 515 SFLD Terpene Cyclase Like 1 C Terminal Domain 190 514 IPR034741 -
Cco10g0581 515 FunFam Isoprene synthase, chloroplastic 25 190 - -
Cco10g0581 515 Gene3D - 25 190 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Cco10g0581 515 Pfam Terpene synthase family, metal binding domain 221 459 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Cco10g0581 515 Pfam Terpene synthase, N-terminal domain 3 164 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Cco10g0581 515 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 2 190 IPR008930 -
Cco10g0581 515 SUPERFAMILY Terpenoid synthases 190 515 IPR008949 -
Cco10g0581 515 Gene3D Farnesyl Diphosphate Synthase 3 504 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0581 K15803 - - csv:101211697 744.577
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0527 Cco-Chr3:5379677 Cco10g0581 Cco-Chr10:7664963 3.00E-69 dispersed
Cco03g0528 Cco-Chr3:5407373 Cco10g0581 Cco-Chr10:7664963 8.90E-44 dispersed
Cco10g0373 Cco-Chr10:4344723 Cco10g0581 Cco-Chr10:7664963 8.80E-143 dispersed
Cco10g0579 Cco-Chr10:7630932 Cco10g0581 Cco-Chr10:7664963 3.50E-122 proximal
Cco10g0581 Cco-Chr10:7664963 Cco10g0584 Cco-Chr10:7705069 1.70E-28 proximal
Cco10g0581 Cco-Chr10:7664963 Cco10g0582 Cco-Chr10:7690287 2.30E-113 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g399 Blo03g00605 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00587 Cam10g0572 Cec10g0605 Cco10g0581 Clacu10g0606 Cmu10g1418 Cre10g0819 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi11g00693 Tan01g1634 . . Hepe07g0540 Mch10g1151 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337