Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0582 ATGAAGGCCAATGACATTCCTGATATTAAGCGTTCTATTGCAAATTTTCACCCTAGTATTTGGAATGATCATCTCCTTTCATTCTCCTTTGATGATGCATTGAAAGTAGATGATGGAATGAAAGGAGTTGAAAAGTTGAAAGAAGAAATAAGAACGATGGTGGTTGCTTCTGTGGGAAATCCATTGGAGAAGCTAAAGTTGGTTGATTCAATCCAACGGCTGGGTGTATCTTATCATTTTGAAAATGAGATTGACCAAGTTTTAGAACATATATATATGTCTTATTCCATTTTATTCACTAAAGATAGCGATGAAGATCTTCATACTATTGCTCTTCTGTTTCGACTTCTCAGGCAACAAGGTTATAAGATTTCATGCGATATATTCTCAAAGTTGATGGACAAGAATGGAAAATTTAAAGAATCATTGGGTAAGGATGAAAGAGGAATTTTGAGCCTATATGAAGCATCACATATGAGGGGACATGGAGAAGATGTGCTTGAGGAAGCTCTTGAATTTACTACCAAACATCTTAAAACATATATTGAGTACTCAAATAATCCTCATTTTGCAGCTGAAGTTAGTAATGCCTTGAAATTGCCTATTAGAAAAGGTGTTCCAAGAATCAAGGCAAGACAGTATTTTGTAATCTATCAACAAGATCCTTCCCACAATGAAACTTTGCTTACATTCTCAAAATTAGACTTCAACATATTACAAAAACTTCACCAAAAGGAGCTAAGTGAAATCTGCAGGTGGTGGAAGGATTTGGAAGTCCCAACAAAATTTCCTTTTGCAAGAGATAGAATTGTGGAGTGCTACTTTTGGACATTGGGATCATACTTCGAACCTCATTTCAGTGTTGGAAGGAAAATGTTAACCAAAGTAATCGCAATTTCTTCAATTTTAGATGATATATATGATGCCTATGGAACATTTCAAGAACTTCAAGTCCTCACTCCAGCAATACAAAGTTTTTCTTAA 984 34.96 MKANDIPDIKRSIANFHPSIWNDHLLSFSFDDALKVDDGMKGVEKLKEEIRTMVVASVGNPLEKLKLVDSIQRLGVSYHFENEIDQVLEHIYMSYSILFTKDSDEDLHTIALLFRLLRQQGYKISCDIFSKLMDKNGKFKESLGKDERGILSLYEASHMRGHGEDVLEEALEFTTKHLKTYIEYSNNPHFAAEVSNALKLPIRKGVPRIKARQYFVIYQQDPSHNETLLTFSKLDFNILQKLHQKELSEICRWWKDLEVPTKFPFARDRIVECYFWTLGSYFEPHFSVGRKMLTKVIAISSILDDIYDAYGTFQELQVLTPAIQSFS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7690287 7692599 + CcPI632755_10g005820.1 Cco10g0582 189540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0582 327 FunFam Isoprene synthase, chloroplastic 59 224 - -
Cco10g0582 327 CDD Terpene_cyclase_plant_C1 11 324 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Cco10g0582 327 Gene3D - 59 224 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Cco10g0582 327 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 17 224 IPR008930 -
Cco10g0582 327 SUPERFAMILY Terpenoid synthases 224 326 IPR008949 -
Cco10g0582 327 Gene3D Farnesyl Diphosphate Synthase 18 325 IPR008949 -
Cco10g0582 327 PANTHER OS04G0344100 PROTEIN-RELATED 15 324 - -
Cco10g0582 327 Pfam Terpene synthase family, metal binding domain 255 325 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Cco10g0582 327 Pfam Terpene synthase, N-terminal domain 20 198 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0582 K15803 - - csv:101211452 517.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0371 Cco-Chr10:4334207 Cco10g0582 Cco-Chr10:7690287 9.40E-18 dispersed
Cco10g0579 Cco-Chr10:7630932 Cco10g0582 Cco-Chr10:7690287 4.20E-67 dispersed
Cco10g0581 Cco-Chr10:7664963 Cco10g0582 Cco-Chr10:7690287 2.30E-113 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g397 Blo03g00606 . . . . . . Bma13g00965 . . . . . . . . . . . . . . . . Cla10g00588 Cam10g0575 Cec10g0606 Cco10g0582 Clacu10g0607 Cmu10g1420 Cre10g0821 . . . . . Csa03g00576 . Cme06g02687 . . . . . . . . . . . . Cma16g00825 . . Cpe14g00717 . Bhi11g00694 Tan01g1630 . . Hepe07g1116 . . . . . . . . . Lsi05g00661 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337