Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0588 ATGCCAACAGTTTGGTTGTCATTGAAGAAATCTTTGCACTGTAAGTCAGAGCCATCAGAAGTTCATGACCCAAAAAGTAGGAAGAATTTAGGAGCAATTTTGACAAGAAAAACAGGGGGCGGAGGAGGAGGAAGATCAGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGCGGCAGCAAAAGGCATTTGGATAAGCCTCCAAGTTGCAGTCCAAGATCCATTGGCAGCAGTGAGTTTCTTAACCCAATAACCCACGAAGTCATTCTCAGCAACTCAAGATGTGAGCTCAAAATCACCGGTTTTCATGGTGGTTTCCCCCAAGATCTTCCTGCCGCCGATCCTCACGGCGGCGCTAACGGCGCTTCCACCTTTGTTGGTACTCTCACACCGGGCACGCCCGGCCCCGGTGGCCACCCTTCAATGCATTACTTCAATCCTTCCTTGAGGTCTTCGAAAAAACTCCCTTTCAGAGAGGGATTTGGTAGCTCTAATAAATCTGGCGGCGGAGGAGCCCGCGGCGGAGTACATTCGAGCAATAGAATCTCTTTGGAAACAGAGAATAGTAGGAATGGATCTTCTGCTGCGGTTACTTGCCATAAATGTGGAGAGCAGTTCAATAAATGGGATGCTGCTGAAGCACATCATCTTTCTAAACATGCTGTGACTGAGCTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATAATTTGCAGGACAAGCTGGTTAAAGTCAGAGAATCAAAGTGGCAGAATAGAAAGAGTCCTAAAAGTTCACAATATGCAACGCACGCTAGCTCGATTCGAGGAGTATCGCGAGACGGTTAAGATCAAAGCCAGCAAGCTTCCAAAGAAGCACCCTCGGTGCCTTGCAGACGGGAACGAGCTCCTGCGATTCTACGGGACGACAGTGGCATGCTCGCTCGGTCTAAACGGCTCCTCCAGCCTATGCATATCAGAGAAATGCTGCGTTTGTAGGATCATACGTAACGGGTTCTCGGCAAAGACAGAAATGAAAGAAGGGATAGGCGTATTCACAACTTCGACGAGTGCGAGAGCATTCAACTCGATCGAGGCAGCAGGAGGGGACGAGACGATGAGGAGGAAAGCGATGATAGTTTGTAGGGTGATTGCAGGGAGAGTTCATAGGCCATTGGAGAACATACAAGAAATGGCTGGGCAGACAGGGTTTGATTCATTGGCGGGGAAAGTTGGGTTGCATTCAAATATAGAAGAGCTTTATTTGCTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAACCATGA 1308 47.71 MPTVWLSLKKSLHCKSEPSEVHDPKSRKNLGAILTRKTGGGGGGRSGCSRSIANLKDVIHGGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFHGGFPQDLPAADPHGGANGASTFVGTLTPGTPGPGGHPSMHYFNPSLRSSKKLPFREGFGSSNKSGGGGARGGVHSSNRISLETENSRNGSSAAVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVLKVHNMQRTLARFEEYRETVKIKASKLPKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCISEKCCVCRIIRNGFSAKTEMKEGIGVFTTSTSARAFNSIEAAGGDETMRRKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7785120 7786740 - CcPI632755_10g005880.1 Cco10g0588 189546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0588 435 Gene3D - 225 434 - -
Cco10g0588 435 MobiDBLite consensus disorder prediction 161 181 - -
Cco10g0588 435 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 434 - -
Cco10g0588 435 ProSitePatterns Zinc finger C2H2 type domain signature. 202 223 IPR013087 -
Cco10g0588 435 FunFam C2H2-like zinc finger protein 224 434 - -
Cco10g0588 435 SUPERFAMILY ADP-ribosylation 225 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2020 Cco-Chr4:34277741 Cco10g0588 Cco-Chr10:7785120 4.20E-66 dispersed
Cco01g0407 Cco-Chr1:4060451 Cco10g0588 Cco-Chr10:7785120 2.80E-23 transposed
Cco02g2103 Cco-Chr2:33898644 Cco10g0588 Cco-Chr10:7785120 1.80E-46 transposed
Cco05g2076 Cco-Chr5:29744977 Cco10g0588 Cco-Chr10:7785120 1.70E-53 transposed
Cco10g0588 Cco-Chr10:7785120 Cco05g1697 Cco-Chr5:24934045 1.10E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60074 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0588 - - - 0.0