Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0590 ATGGACTCTTTCTCTCCAGCATTGCTGGCCTTTAACTTTATCCTTTATCTCTTCACCTATGTAGCTGCCACTGATTCCTTAACTGCTCAAAACCCATTTCTCAGAGATGGCTTTAGTCTGGTCTCCAAAAATGGAAATTTCGAATTGGGTTTCTTCAGTCCTGGTCTTTCGAGAGACCGTTACTTGGGAATTTGGTTCAAGAATCGGCGAGGTCCGACCTCTGTTTGGGTTGCGAATAGGAAAACCCCAATTAATGACTCATCTGGTGTCCTGATGATGAACCTTACACCAGGAAATCTTACACTCTATAGCCATAATTCCACCGCCGCCATTGTTTGGTCCGCCAGGTTGCTGAGAAAAGTCCCCAATGGAGTACTCCAATTATTGGACACTGGAAATCTTGTGCTGAGAGATAGGGAAGATGAAAATCCCCAAAATTACTCGTGGCAAAGTTTTGATTACCCTACTGACACTCTTTTGCCTGGAATGAAGCTGGGTTGGGACTTGAGAAATAACATAAATAGAAGATTAGATGCTTGGAAAAATCCCAATGACCCATCTCCTGGAAACCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAGTCTGTCATGTGGAAAGGTTCCCAAGAATACTTCAGGCATGGCCCATGGAATGGTGTGAGAGTCACTAGTAGACCACTGGGTATTGCACCAATTCTGAACTTTAACTTTGTTTCAAATGAAGATGAAGTTTACTACCAATACTCTGTTGTTAATAAGTCTCATACAGTGATGGTGGTGATGAACCAATCCAATTACCTGCGCATAATGTACTTATGGTCTGCAGCTGAGAGACAGTGGAGACTTTACACTTCATTGCCAAGAGATTTCTGTGACAATTATGCCCTGTGTGGCCCTTATGGGTATTGTGATATAAGGGTAACTCCATCTTGTAAATGTCTAGAAGGGTTTAAGCCAAGATCACCTGATAGTTGGACAGCAGGGGAATTTGCGGATGGTTGTGAACGAAACAAACTGATGAACTGTGGTGATGAAGTTGGCTTTGCACAGCTCAACCAGCTGAAATTGCCAGACACAAAGCATACTTGGGTAAACAAAAGCATGAATCTTGAAGAGTGCAGGCAAAAATGCTTGAGAAATTGCTCTTGTATGGCTTATGCAAATACAAATATCAGTGGGAGTGGCAGTGGCTGTGCCTTGTGGATTGGTGATCTAATTGACTTGAAATTGATCCCGGACGCAGGACAAGATTTATATGTCAAAATGCTTGCATCAGAATTAGTCAAGCGTAGGGAGGCACACAAAACTGAAAGATTGAATCCTAAGGTGAAGATATCTTTGGTTGTGATTGTTGCCAGTTTCAGTTTGGCTATCCTCTTCATATGCTTATACATTTTCAAAAAGAGATCAACCATCAAAGATGACCATGAGAAAATAGAAGCTCAAGATCTGGAGCTTCCCTTATTTGATCTATCCTTGATAAATAGTGCCACAAATAACTTCTCGATTGATAATAAGTTAGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATGTTGCAGTGAAGAGACTTTCACGGAGTTCTGGACAGGGAATGAACGAGTTTAAGAATGAAGTAATCCTGATTGCAAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGCTGCATTCAAGGAGAAGAGAAAATGTTAGTTTATGAGTACATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATCGAACACAACGTCAGTTATTAGACTGGTCACAACGATACCACATTATTTGTGGAATTGCTAGAGGACTCATGTATCTTCATCAAGATTCTCGATTGAGGATTATACATAGAGATTTAAAAGCTAGTAATGTGTTACTAGATATGGATATGAATCCGAAAATCTCTGATTTTGGTTTGGCTAAAACTTGCGGTGGAGATCAAACTGAAGGACGAACGATAAAAGTGGTCGGAACTTACGGATATATGGCACCTGAATATGCTTTTGATGGACGATTCTCAGTAAAATCTGATGCTTTTAGTTATGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGCAGAAGTTTCTGCCACTTGAATGACCAAAATCTTATTGCATATGCCTGGCGATTGTGGAAAGAAGGAAATCCAGAGGAATTGATTGACGACGCCATTCGAGAAACATGCATCATTTCGGAGGTATTGAGATGTATCAATATCAGTTTGTTGTGTGTCCAACAACATCCTAACGATCGACCCACAATGTCATCGGTGGTTATGATGTTAGGCTGTGAAATTCCTTTGTCGCAACCAAAACAACCCGGATTTTTCGTAGAAAATGAAGCCATTGCAATGAAGAGTGGCTCAAGTAAAGACAAATCAACTTCAACTAATGAATTAACTATTACACTCCCAGATCCAAGAATGCCAGATAGCCCTCTAGAAGTGAGAAAGCTTGATTTTGGACGATTGAGAGGCCGAGCCAGAATCAAAACTTTGCCTCCCCAGAAAATAGACACTTTTAACGGTAAATTTTCATTTCTTGTCCTCATTCCAAATGACCTCATCTTCCGAAGGATGACCGACCAGAGGAATGCTCAAAATATCTTCGACGTTATGAGGGATGAAAGCATATTTAATCAACTCACTATTCCAACCACCATTCGAGGAGAGAAGATCAGCCACTTGTTTTTGGAAGAATTCATTCCTAATCACACAAGGCTTAAGAACTTCCTTCCTTAA 2772 40.51 MDSFSPALLAFNFILYLFTYVAATDSLTAQNPFLRDGFSLVSKNGNFELGFFSPGLSRDRYLGIWFKNRRGPTSVWVANRKTPINDSSGVLMMNLTPGNLTLYSHNSTAAIVWSARLLRKVPNGVLQLLDTGNLVLRDREDENPQNYSWQSFDYPTDTLLPGMKLGWDLRNNINRRLDAWKNPNDPSPGNLSWRMELHEYPESVMWKGSQEYFRHGPWNGVRVTSRPLGIAPILNFNFVSNEDEVYYQYSVVNKSHTVMVVMNQSNYLRIMYLWSAAERQWRLYTSLPRDFCDNYALCGPYGYCDIRVTPSCKCLEGFKPRSPDSWTAGEFADGCERNKLMNCGDEVGFAQLNQLKLPDTKHTWVNKSMNLEECRQKCLRNCSCMAYANTNISGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLASELVKRREAHKTERLNPKVKISLVVIVASFSLAILFICLYIFKKRSTIKDDHEKIEAQDLELPLFDLSLINSATNNFSIDNKLGEGGFGPVYKGKLTNGQDVAVKRLSRSSGQGMNEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLVYEYMPNKSLDFFIFDRTQRQLLDWSQRYHIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGRTIKVVGTYGYMAPEYAFDGRFSVKSDAFSYGILLLEIISGKRSRSFCHLNDQNLIAYAWRLWKEGNPEELIDDAIRETCIISEVLRCINISLLCVQQHPNDRPTMSSVVMMLGCEIPLSQPKQPGFFVENEAIAMKSGSSKDKSTSTNELTITLPDPRMPDSPLEVRKLDFGRLRGRARIKTLPPQKIDTFNGKFSFLVLIPNDLIFRRMTDQRNAQNIFDVMRDESIFNQLTIPTTIRGEKISHLFLEEFIPNHTRLKNFLP 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7796754 7803291 - CcPI632755_10g005900.1 Cco10g0590 189548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0590 923 Gene3D Phosphorylase Kinase; domain 1 465 577 - -
Cco10g0590 923 SUPERFAMILY Protein kinase-like (PK-like) 486 772 IPR011009 -
Cco10g0590 923 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 577 - -
Cco10g0590 923 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 780 - -
Cco10g0590 923 SMART serkin_6 502 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0590 923 Pfam D-mannose binding lectin 73 181 IPR001480 -
Cco10g0590 923 ProSiteProfiles Protein kinase domain profile. 502 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0590 923 MobiDBLite consensus disorder prediction 797 817 - -
Cco10g0590 923 Pfam Protein tyrosine and serine/threonine kinase 503 771 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0590 923 Gene3D - 19 152 IPR036426 -
Cco10g0590 923 CDD PAN_AP_plant 341 422 - -
Cco10g0590 923 ProSiteProfiles Bulb-type lectin domain profile. 25 149 IPR001480 -
Cco10g0590 923 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544(InterPro)
Cco10g0590 923 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 786 - -
Cco10g0590 923 Pfam PAN-like domain 344 409 IPR003609 -
Cco10g0590 923 MobiDBLite consensus disorder prediction 797 813 - -
Cco10g0590 923 SMART ntp_6 344 423 IPR003609 -
Cco10g0590 923 CDD STKc_IRAK 508 772 - -
Cco10g0590 923 SMART blect_4 31 155 IPR001480 -
Cco10g0590 923 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 186 IPR036426 -
Cco10g0590 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0590 923 Gene3D Transferase(Phosphotransferase) domain 1 578 779 - -
Cco10g0590 923 CDD B_lectin 34 155 IPR001480 -
Cco10g0590 923 PIRSF SRK 1 818 IPR024171 GO:0004674(InterPro)
Cco10g0590 923 ProSiteProfiles PAN/Apple domain profile. 343 424 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0540 Cco-Chr3:5544034 Cco10g0590 Cco-Chr10:7796754 1.60E-120 dispersed
Cco05g1723 Cco-Chr5:25503525 Cco10g0590 Cco-Chr10:7796754 1.50E-271 dispersed
Cco07g0638 Cco-Chr7:10124302 Cco10g0590 Cco-Chr10:7796754 1.20E-80 dispersed
Cco09g0250 Cco-Chr9:2272294 Cco10g0590 Cco-Chr10:7796754 2.60E-98 dispersed
Cco10g0590 Cco-Chr10:7796754 Cco09g0207 Cco-Chr9:1841038 6.40E-122 dispersed
Cco10g0590 Cco-Chr10:7796754 Cco10g0591 Cco-Chr10:7814722 0.00E+00 tandem
Cco10g0590 Cco-Chr10:7796754 Cco03g0535 Cco-Chr3:5490912 1.10E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87140 PF07714 PK_Tyr_Ser-Thr 2.00E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0590 - - - 0.0