Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0591 ATGGACTCTTTCTTCTTCTCAACACTCGTTGCCTTTAACTTAGTCTTTCTTCTCTTCAGGTCTCTTGCTGTCTCCGATTCCTTAACGGCTCAAAACCCGTATCTCAGAGATGGCCTTACTCTGGTCTCTAGAAATGGAATCTTCGAATTGGGTTTCTTCAGTCCTGGACTTCCCGCCAACCGTTACTTGGGAATCTGGTTCAAGAATCGGCGAGGTCCGACCTCTGTTTGGGTTGCGAACAGGAAAACCCCCATTAATGATTCGTCTGGTGTACTGGTGATGAACATTACAACAGGAAATCTTACACTCTACAGCCATAATTCCACTGCCATTGTTTGGTCTGCCAGGTTACTGAGAAAAGTCCCCAACGGGGTACTCCAACTATTGGACACTGGAAATCTTGTGCTGAGGAATAGGGAAGGTGAAGATCCGCGAAACTATTCCTGGCAAAGCTTTGATTACCCTACTGACACTCTCTTGCCTGGAATGAAGCTAGGTTGGGACTTGAGAAATAACATAGAAAGAAGATTAGAGGCTTGGAAGAATCTCAATGATCCATCTCCTGGAGACCTCAGTTGGAGGATGGAGCTTCATGAATATCCCGAGACTGTCATGTGGAATGGTTCCAAAAAGTACGTCAGGCATGGCCCATGGAATGGTGTGAGACTCAGTAGTAGACCACTAGCTGCAGCGCCAATTTTGAACTTCAACTTTGTTTCAAATGAGGATGAGGTTTACTACCAATACTCTGTTGTAAATAAGTCTCATTCAGTGATGTTGGTGATGAACCAATCCAATTATGTGCGCATATTGTACTTGTGGTCTGCAGCTGAAAGACGGTGGAGAGTTTACACTTCATTACCAAGAGATAACTGTGACAATTATGCCCTGTGTGGCCCCTATGGATATTGTGATATAAGAGTCACCCCATCTTGTTTATGTCTAGAAGGGTTCAAGCCAAGATCACCTGATAGTTGGGAGGCCGGGGAATTTGCAGACGGTTGTGAACGAAACAAACTGATGAACTGTGGTGATGAAGTTGGGTTTGCACAGCTCAACCAGTTGAAATTGCCAGACACTAAGCATACTTGGGTCAACAAAAGCATGAATCTTGAGGAGTGCAAGCAAAAATGCTTGAGAAATTGTTCGTGTGTGGCTTATGCAATGACAAATGTCAGTGGTAGTGGCAGTGGCAGTGGCTGTGCCTTGTGGATTGGTGATCTAATTGACTTGAAACTGATCCCGGACGCAGGACAGGATTTATATGTCAAAATGCTGGCATCAGAATTAGTCAAGCATGGGGAGGCACACAAAACTGAAAGATTGAATCCTAAGGTGAAGATTGCTTTGTTTGTGATTTCCGGTTTAGGTTTGGCTATCCTCTTCATAGGCATAGGCGTATACATTTTCAAGAAGCGATCAACCTTCAAAGATGAACAAGAGAAAATAGAAGCTAAAGACCTGGAGCTTCCCTTGTTTGATCTATCCTTGATTAATAGTGCCACAGATAACTTCTCACATAATAATAAGCTAGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATGTTGCAGTGAAGAGACTTTCACAGAGTTCTGGACAAGGAACGAATGAGTTTAAGAATGAAGTGATCCTGATCGCAAAACTGCAACATCGAAACCTTGTGAAGCTTCTTGGTTGCTGCATTCAAGGAGATGAGAAAATGCTAGTTTATGAGTATATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATCAAACACAACGTCAATTATTAAATTGGTCAAAACGGTACCGAATTATTTGTGGAGTTGCTAGAGGACTCATGTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATTTAAAAGCAAGTAATGTTTTACTAGATATGGATATGAATCCAAAAATCTCTGATTTTGGACTGGCTAAAACTTGTGGTGGGGATCAAACTGGAGGAAGAACATTAAGAGTGGTCGGAACTTACGGATATATGGCACCAGAGTATGCTTTTGATGGACAATTCTCAGTGAAATCTGATGCTTTTAGTTATGGCATTTTGCTGCTGGAGATCATTAGTGGGAAAAGAAGCAGAACTTTCTGCCATTTGAATGACCAAAATCTAATAGCATATGCATGGCGATTGTGGAAAGAAGGAAATATAGAAGAATTGATCGACGATGCCATTCGAGAAACATGCAGCCTTTCGGAGGTACTGAGATGTATCAATATCAGTTTGTTGTGTGTTCAACAACATCCAAATGATCGACCCACAATGTCATCGGTGGTTATGATGTTAGGCTGTGAAATTCCTTTGTCGCAACCGAAACAACCCGGATTTTTCATAGAAAATGAAAAAGCCATTGCAATGAAAAGAGGCTTAAGTAAAGATAAATCAACTTCAACTAATGAATTGACTATTACGCTCCCAGATCCGAGGTAA 2469 41.6 MDSFFFSTLVAFNLVFLLFRSLAVSDSLTAQNPYLRDGLTLVSRNGIFELGFFSPGLPANRYLGIWFKNRRGPTSVWVANRKTPINDSSGVLVMNITTGNLTLYSHNSTAIVWSARLLRKVPNGVLQLLDTGNLVLRNREGEDPRNYSWQSFDYPTDTLLPGMKLGWDLRNNIERRLEAWKNLNDPSPGDLSWRMELHEYPETVMWNGSKKYVRHGPWNGVRLSSRPLAAAPILNFNFVSNEDEVYYQYSVVNKSHSVMLVMNQSNYVRILYLWSAAERRWRVYTSLPRDNCDNYALCGPYGYCDIRVTPSCLCLEGFKPRSPDSWEAGEFADGCERNKLMNCGDEVGFAQLNQLKLPDTKHTWVNKSMNLEECKQKCLRNCSCVAYAMTNVSGSGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLASELVKHGEAHKTERLNPKVKIALFVISGLGLAILFIGIGVYIFKKRSTFKDEQEKIEAKDLELPLFDLSLINSATDNFSHNNKLGEGGFGPVYKGKLTNGQDVAVKRLSQSSGQGTNEFKNEVILIAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLDFFIFDQTQRQLLNWSKRYRIICGVARGLMYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTGGRTLRVVGTYGYMAPEYAFDGQFSVKSDAFSYGILLLEIISGKRSRTFCHLNDQNLIAYAWRLWKEGNIEELIDDAIRETCSLSEVLRCINISLLCVQQHPNDRPTMSSVVMMLGCEIPLSQPKQPGFFIENEKAIAMKRGLSKDKSTSTNELTITLPDPR 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7814722 7818084 - CcPI632755_10g005910.1 Cco10g0591 189549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0591 822 CDD STKc_IRAK 511 775 - -
Cco10g0591 822 SUPERFAMILY Protein kinase-like (PK-like) 490 775 IPR011009 -
Cco10g0591 822 ProSiteProfiles PAN/Apple domain profile. 343 426 IPR003609 -
Cco10g0591 822 MobiDBLite consensus disorder prediction 802 822 - -
Cco10g0591 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0591 822 Pfam S-locus glycoprotein domain 214 321 IPR000858 GO:0048544(InterPro)
Cco10g0591 822 Pfam Protein tyrosine and serine/threonine kinase 508 774 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0591 822 SMART blect_4 32 155 IPR001480 -
Cco10g0591 822 SMART ntp_6 344 425 IPR003609 -
Cco10g0591 822 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 22 789 - -
Cco10g0591 822 Pfam PAN-like domain 344 411 IPR003609 -
Cco10g0591 822 Gene3D Transferase(Phosphotransferase) domain 1 581 782 - -
Cco10g0591 822 ProSiteProfiles Protein kinase domain profile. 505 789 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0591 822 Gene3D Phosphorylase Kinase; domain 1 467 580 - -
Cco10g0591 822 PIRSF SRK 1 822 IPR024171 GO:0004674(InterPro)
Cco10g0591 822 Gene3D - 21 152 IPR036426 -
Cco10g0591 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 581 783 - -
Cco10g0591 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 186 IPR036426 -
Cco10g0591 822 SMART serkin_6 505 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0591 822 Pfam D-mannose binding lectin 74 181 IPR001480 -
Cco10g0591 822 ProSiteProfiles Bulb-type lectin domain profile. 26 149 IPR001480 -
Cco10g0591 822 CDD PAN_AP_plant 341 424 - -
Cco10g0591 822 CDD B_lectin 34 155 IPR001480 -
Cco10g0591 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 470 580 - -
Cco10g0591 822 MobiDBLite consensus disorder prediction 804 822 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0535 Cco-Chr3:5490912 Cco10g0591 Cco-Chr10:7814722 3.30E-181 dispersed
Cco04g2015 Cco-Chr4:34259223 Cco10g0591 Cco-Chr10:7814722 5.40E-98 dispersed
Cco04g2016 Cco-Chr4:34266056 Cco10g0591 Cco-Chr10:7814722 4.20E-101 dispersed
Cco10g0591 Cco-Chr10:7814722 Cco09g0207 Cco-Chr9:1841038 6.50E-118 dispersed
Cco10g0590 Cco-Chr10:7796754 Cco10g0591 Cco-Chr10:7814722 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87141 PF07714 PK_Tyr_Ser-Thr 6.40E-50 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0591 - - - 0.0