Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0601 ATGGCCACCACCTCCGACACATCCGACCATGAACAATTAGAAGAAGAAGAATCAGAAGAAGAGCCGTCCAACGGTGGGTTCTGCCGGAGCCTGTACGGAGTCGGCTCAGTTCTTGACCCAACAACCAAATGGGTCCGAGAATGGAACCGTGTCTTCCTCCTCGTCTGTGCGGCGGGGCTGTTCGTCGACCCTCTCTTTCTCTACACGCTATCGATAAGCGAGTCGTGGACGTGCGTCTTTATCGATGGGTGGTTGGCCATCACCGTCACCGTCCTCCGCTGCATGGCCGACGCTTTGCACCTTTGGAACATGTGGCTCCAGCTCAAGACTGCCACAAGGTCCTCCTTTTCCGGTAGCAGCGGCGGTGATGCGACGGCCGAAAATAGAGGCCTTAGAGATACCACCCCACGCGCCGTCGCTCTCCGGTATTTCAAGTCCAAGAAAGGCTTCTTCTTTGATCTCTTTGTTATTCTTCCCATTCCTCAGGTTGTATTATGGGTTGTAATTCCTAGAATAATGAAAGAAGGAAGAGTGACATTGGTGATGACAGTATTATTAATAGTATTTTTGTTTCAATATTTGCCAAAGTTGTACCATTCCGTTTGCTTGTTGCGGCGCCTCCAAAACCTATCTGGCTACATCTTCGGCACTGTTTGGTGGGGCATTGCTCTCAATCTCATTGCTTACTTTGTTGCTGCCCATGCTGCAGGAGCATGTTGGTATCTATTGGGGGTACAAAGAGCAGCAAAATGCTTAAAAGAGCAATGCGGAGCAAGAAGCAACAGCTGTGGGTTTAGATTGCTATCATGCAAAGACCCAATTTTCTATGGAGCAAATAATATGGGAATAGGGAGAGACAGGGGGAGATTTGATTGGGCAAACAACAGGCAAATAAAGTTAATGTGTTTGGATACTTCTGATAACTATGATTATGGAGCTTACAAATGGACTGTTCAGCTTGTTATCAATCAAAGTCGCTTGGAGAAGATCCTTTTTCCCATCTTTTGGGGCCTCATGACTCTTAGTACCTTTGGGAACTTGGAAAGCACCACTGAATGGCTGGAAGTAGTGTTCAATATTATTGTTCTCACCAGTGGACTCCTATTGGTCACCATGTTGATTGGAAATATCAAGGTGTTTCTGCATGCAACAACGTCAAAGAAGCAAGCAATGCAGCTGAAGATGAGGAACCTAGAGTGGTGGATGAGGAAGCGACGGCTGCCACAAGGATTCCGGCAGCGTGTGCGAAACTACGAGCGGCAGCGGTGGGCAGCGATGCGAGGTGTGGACGAGTGCGAGATGATAAAAAACCTACCGGAAGGGCTGCGGCGAGACATAAAGTATCACCTTTGCTTGGATTTGGTTAGGCAGGTGCCATTGTTTCAACATATGGATGATCTTGTTCTTGAGAACATTTGTGATCGTGTCAAGTCCCTCATCTTCACCAAGGGCGAAACTATAACAAGAGAAGGAGATCCAGTACAAAGAATGCTATTCGTTGTGAGAGGGCATCTCCAAAGCAGCCAAGTGTTACGCGACGGCGTAAAAAGTTGTTGCATGTTAGGCCCAGGCAACTTCAGTGGCGACGAGCTTCTATCCTGGTGCCTCCGCCGCCCCTTCATAGAGCGCCTTCCCCCCTCCTCCTGCACTCTCGTCACACTCGAGACCACCGAGGCCTTCGGCTTGGAGGCTGACGACGTCAAGTACGTAACCCAGCACTTCCGCTACACTTTCGTCAACGACAAGGTCAAGCGCAGCGCCCGCTACTACTCCCCCGGCTGGCGCACTTGGGCAGCTGTCGCCATCCAGCTCGCCTGGCGCCGTTATCGCCACCGTCTCACACTCACGTCTTTGTCCTTTATTCGGCCCCGCCGCCCGCTCTCACGCTGCTCTTCCTTAGGGGAGGATCGCCTCCGCCTCTATACAGCATTGCTTACTTCTCCTAAGCCCAATCAGGACCATTTTGATTTTTGA 1974 50.25 MATTSDTSDHEQLEEEESEEEPSNGGFCRSLYGVGSVLDPTTKWVREWNRVFLLVCAAGLFVDPLFLYTLSISESWTCVFIDGWLAITVTVLRCMADALHLWNMWLQLKTATRSSFSGSSGGDATAENRGLRDTTPRAVALRYFKSKKGFFFDLFVILPIPQVVLWVVIPRIMKEGRVTLVMTVLLIVFLFQYLPKLYHSVCLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHAAGACWYLLGVQRAAKCLKEQCGARSNSCGFRLLSCKDPIFYGANNMGIGRDRGRFDWANNRQIKLMCLDTSDNYDYGAYKWTVQLVINQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNLEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLVTLETTEAFGLEADDVKYVTQHFRYTFVNDKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDHFDF 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8019795 8025979 - CcPI632755_10g006010.1 Cco10g0601 189559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0601 657 SUPERFAMILY Voltage-gated potassium channels 40 381 - -
Cco10g0601 657 MobiDBLite consensus disorder prediction 1 26 - -
Cco10g0601 657 SMART cnmp_10 460 589 IPR000595 -
Cco10g0601 657 Gene3D Jelly Rolls 458 576 IPR014710 -
Cco10g0601 657 FunFam cyclic nucleotide-gated ion channel 4 458 576 - -
Cco10g0601 657 Pfam Cyclic nucleotide-binding domain 481 570 IPR000595 -
Cco10g0601 657 FunFam Cyclic nucleotide-gated ion channel 1 387 451 - -
Cco10g0601 657 SUPERFAMILY cAMP-binding domain-like 386 574 IPR018490 -
Cco10g0601 657 ProSiteProfiles cAMP/cGMP binding motif profile. 460 539 IPR000595 -
Cco10g0601 657 CDD CAP_ED 460 566 IPR000595 -
Cco10g0601 657 Gene3D Helix hairpin bin 385 451 - -
Cco10g0601 657 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 35 614 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0601 Cco-Chr10:8019795 Cco11g0474 Cco-Chr11:5052540 7.10E-184 dispersed
Cco10g0601 Cco-Chr10:8019795 Cco10g1423 Cco-Chr10:27327317 5.00E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0601 K05391 - csv:101207531 1224.54