Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0603 ATGGCCGCCACCGCCACCGCCACCTCCGCCACCCTCCTCCGGGCTACTCCCTTTCTTGGCCAGACCAGAGGCTCTTCCCAGAACTCCCTCAGAGATGTCGTCGCCATGGGAACTGGCAAATACACCATGGGAAATGATCTGTGGTATGGACCAGACAGAGTGAAGTACTTGGGGCCGTTTTCAGCTCAGACTCCATCCTACTTGAACGGTGAATTCCCCGGCGATTATGGATGGGACACTGCTGGCTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTCGAGGTGATCCACGGGAGGTGGGCCATGTTGGGAGCATTGGGTTGCATAACACCCGAAGTGCTAGAAAAATGGCTTAAAGTGGACTTCAAGGAGCCAGTGTGGTTCAAGGCAGGGGCCCAAATCTTCACAGAAGGTGGTCTAGACTACCTAGGCAACCCCAACCTGGTCCACGCCCAGAGCATCCTAGCCGTCTTGGGGTTCCAAGTGGTCCTAATGGGTCTTGTCGAAGGCTTCCGCATCAACGGCCTCGACGGTGTCGGCGAGGGCAACGACCTCTACCCGGGCGGTCAGTACTTTGACCCTCTCGGACTGGCCGATGACCCAGTCACCTTCGCGGAGCTGAAGGTCAAGGAGATCAAGAATGGCCGTCTTGCCATGTTTTCCATGTTTGGCTTCTTTGTTCAGGCCATTGTCACTGGAAAGGGCCCTCTTGAGAACCTTCTTGACCATCTTGATAACCCTGTGGCTAACAATGCCTGGGTTTATGCTACCAAGTTTGCCCCTGGCTCATAA 801 55.93 MAATATATSATLLRATPFLGQTRGSSQNSLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8051347 8053066 + CcPI632755_10g006030.1 Cco10g0603 189561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0603 266 FunFam Chlorophyll a-b binding protein, chloroplastic 55 259 - -
Cco10g0603 266 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 27 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cco10g0603 266 SUPERFAMILY Chlorophyll a-b binding protein 47 263 - -
Cco10g0603 266 Gene3D Chlorophyll a/b binding protein domain 55 259 - -
Cco10g0603 266 Pfam Chlorophyll A-B binding protein 65 233 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2218 Cco-Chr4:35799355 Cco10g0603 Cco-Chr10:8051347 1.50E-95 dispersed
Cco10g0603 Cco-Chr10:8051347 Cco10g1167 Cco-Chr10:24263188 4.30E-95 dispersed
Cco10g0603 Cco-Chr10:8051347 Cco02g1970 Cco-Chr2:32643188 1.30E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0603 K08914 - csv:101207278 521.161